Hb_015807_080

Information

Type -
Description -
Location Contig15807: 81655-97384
Sequence    

Annotation

kegg
ID pop:POPTR_0005s01360g
description MORPHEUS MOLECULE family protein
nr
ID XP_012064622.1
description PREDICTED: helicase protein MOM1-like [Jatropha curcas]
swissprot
ID Q9M658
description Helicase protein MOM1 OS=Arabidopsis thaliana GN=MOM1 PE=1 SV=1
trembl
ID A0A067LAQ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22912 PE=4 SV=1
Gene Ontology
ID GO:0005488
description helicase protein mom1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13890: 81880-82100 , PASA_asmbl_13891: 82441-82559 , PASA_asmbl_13894: 83121-86659 , PASA_asmbl_13895: 87146-87531 , PASA_asmbl_13896: 89186-92846 , PASA_asmbl_13897: 93873-97067 , PASA_asmbl_13898: 93244-97067
cDNA
(Sanger)
(ID:Location)		 041_I10.ab1: 93873-94475

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015807_080 0.0 - - PREDICTED: helicase protein MOM1-like [Jatropha curcas]
2 Hb_008120_040 0.0899762339 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
3 Hb_000086_640 0.0991471387 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
4 Hb_004117_270 0.104077121 - - -
5 Hb_104920_010 0.1146305224 - - hypothetical protein VITISV_031859 [Vitis vinifera]
6 Hb_000753_140 0.11532251 - - PREDICTED: uncharacterized protein LOC105640672 [Jatropha curcas]
7 Hb_005941_020 0.1210413014 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
8 Hb_000445_210 0.1233152809 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105639010 [Jatropha curcas]
9 Hb_161901_020 0.1234647149 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Vitis vinifera]
10 Hb_000260_160 0.1241118317 transcription factor TF Family: GNAT ATP binding protein, putative [Ricinus communis]
11 Hb_002804_010 0.1250818919 - - PREDICTED: U-box domain-containing protein 33-like [Jatropha curcas]
12 Hb_003725_010 0.1269444865 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
13 Hb_000979_140 0.1269459499 - - kinase family protein [Populus trichocarpa]
14 Hb_000609_110 0.1291528449 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
15 Hb_001247_210 0.1318360828 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000270_600 0.1329400976 - - PREDICTED: uncharacterized protein LOC105640430 isoform X1 [Jatropha curcas]
17 Hb_033930_010 0.1330332077 - - PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
18 Hb_002482_030 0.1341509242 transcription factor TF Family: PLATZ unknown [Medicago truncatula]
19 Hb_000418_050 0.1343019574 - - PREDICTED: uncharacterized protein LOC105636892 [Jatropha curcas]
20 Hb_005183_140 0.1348793264 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_015807_080 Hb_015807_080 Hb_008120_040 Hb_008120_040 Hb_015807_080--Hb_008120_040 Hb_000086_640 Hb_000086_640 Hb_015807_080--Hb_000086_640 Hb_004117_270 Hb_004117_270 Hb_015807_080--Hb_004117_270 Hb_104920_010 Hb_104920_010 Hb_015807_080--Hb_104920_010 Hb_000753_140 Hb_000753_140 Hb_015807_080--Hb_000753_140 Hb_005941_020 Hb_005941_020 Hb_015807_080--Hb_005941_020 Hb_000673_010 Hb_000673_010 Hb_008120_040--Hb_000673_010 Hb_001766_070 Hb_001766_070 Hb_008120_040--Hb_001766_070 Hb_000260_160 Hb_000260_160 Hb_008120_040--Hb_000260_160 Hb_000979_140 Hb_000979_140 Hb_008120_040--Hb_000979_140 Hb_000506_110 Hb_000506_110 Hb_008120_040--Hb_000506_110 Hb_000035_490 Hb_000035_490 Hb_000086_640--Hb_000035_490 Hb_132840_020 Hb_132840_020 Hb_000086_640--Hb_132840_020 Hb_033930_010 Hb_033930_010 Hb_000086_640--Hb_033930_010 Hb_000086_640--Hb_005941_020 Hb_000086_640--Hb_000753_140 Hb_025787_010 Hb_025787_010 Hb_004117_270--Hb_025787_010 Hb_004117_270--Hb_000260_160 Hb_012799_150 Hb_012799_150 Hb_004117_270--Hb_012799_150 Hb_004117_270--Hb_008120_040 Hb_004117_270--Hb_104920_010 Hb_002107_100 Hb_002107_100 Hb_104920_010--Hb_002107_100 Hb_104920_010--Hb_012799_150 Hb_104920_010--Hb_025787_010 Hb_000418_050 Hb_000418_050 Hb_104920_010--Hb_000418_050 Hb_001369_030 Hb_001369_030 Hb_104920_010--Hb_001369_030 Hb_000318_410 Hb_000318_410 Hb_000753_140--Hb_000318_410 Hb_002804_010 Hb_002804_010 Hb_000753_140--Hb_002804_010 Hb_001386_020 Hb_001386_020 Hb_000753_140--Hb_001386_020 Hb_000753_140--Hb_132840_020 Hb_001894_160 Hb_001894_160 Hb_005941_020--Hb_001894_160 Hb_005941_020--Hb_033930_010 Hb_011671_110 Hb_011671_110 Hb_005941_020--Hb_011671_110 Hb_015026_020 Hb_015026_020 Hb_005941_020--Hb_015026_020 Hb_000317_190 Hb_000317_190 Hb_005941_020--Hb_000317_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.58144 20.3451 21.7898 6.75412 1.57837 2.80342
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.56712 3.70231 3.018 6.29191 13.7187

CAGE analysis