Hb_001386_020

Information

Type -
Description -
Location Contig1386: 60281-64799
Sequence    

Annotation

kegg
ID rcu:RCOM_1676810
description hypothetical protein
nr
ID XP_002509502.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID F4I9E1
description Protein NUCLEAR FUSION DEFECTIVE 4 OS=Arabidopsis thaliana GN=NFD4 PE=3 SV=1
trembl
ID B9RBG8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1676810 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10576: 60387-64763
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001386_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000086_640 0.1072680256 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
3 Hb_000753_140 0.108733638 - - PREDICTED: uncharacterized protein LOC105640672 [Jatropha curcas]
4 Hb_132840_020 0.1151822511 - - PREDICTED: protein LHY [Jatropha curcas]
5 Hb_000035_490 0.118680357 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
6 Hb_002383_050 0.1222370085 - - PREDICTED: uncharacterized protein LOC105628744 [Jatropha curcas]
7 Hb_011381_070 0.1291759565 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
8 Hb_001514_240 0.1303562687 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
9 Hb_000318_410 0.1314674506 - - PREDICTED: extra-large guanine nucleotide-binding protein 1-like [Jatropha curcas]
10 Hb_001499_070 0.1315333468 - - PREDICTED: calcium-transporting ATPase 9, plasma membrane-type isoform X1 [Jatropha curcas]
11 Hb_000336_180 0.1321209641 - - conserved hypothetical protein [Ricinus communis]
12 Hb_187005_010 0.1322331827 transcription factor TF Family: MYB-related PREDICTED: 1-phosphatidylinositol 3-phosphate 5-kinase [Jatropha curcas]
13 Hb_000035_060 0.1330492651 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Jatropha curcas]
14 Hb_000446_040 0.1360259377 - - PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
15 Hb_007224_010 0.1366171906 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
16 Hb_002804_010 0.1374808572 - - PREDICTED: U-box domain-containing protein 33-like [Jatropha curcas]
17 Hb_015807_080 0.1403120511 - - PREDICTED: helicase protein MOM1-like [Jatropha curcas]
18 Hb_000933_110 0.1414271994 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]
19 Hb_000366_050 0.1435020219 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
20 Hb_002997_110 0.1446995253 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 22 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001386_020 Hb_001386_020 Hb_000086_640 Hb_000086_640 Hb_001386_020--Hb_000086_640 Hb_000753_140 Hb_000753_140 Hb_001386_020--Hb_000753_140 Hb_132840_020 Hb_132840_020 Hb_001386_020--Hb_132840_020 Hb_000035_490 Hb_000035_490 Hb_001386_020--Hb_000035_490 Hb_002383_050 Hb_002383_050 Hb_001386_020--Hb_002383_050 Hb_011381_070 Hb_011381_070 Hb_001386_020--Hb_011381_070 Hb_000086_640--Hb_000035_490 Hb_000086_640--Hb_132840_020 Hb_015807_080 Hb_015807_080 Hb_000086_640--Hb_015807_080 Hb_033930_010 Hb_033930_010 Hb_000086_640--Hb_033930_010 Hb_005941_020 Hb_005941_020 Hb_000086_640--Hb_005941_020 Hb_000086_640--Hb_000753_140 Hb_000318_410 Hb_000318_410 Hb_000753_140--Hb_000318_410 Hb_002804_010 Hb_002804_010 Hb_000753_140--Hb_002804_010 Hb_000753_140--Hb_015807_080 Hb_000753_140--Hb_132840_020 Hb_001294_050 Hb_001294_050 Hb_132840_020--Hb_001294_050 Hb_048476_040 Hb_048476_040 Hb_132840_020--Hb_048476_040 Hb_132840_020--Hb_011381_070 Hb_001627_010 Hb_001627_010 Hb_132840_020--Hb_001627_010 Hb_000329_790 Hb_000329_790 Hb_132840_020--Hb_000329_790 Hb_000035_490--Hb_011381_070 Hb_001021_100 Hb_001021_100 Hb_000035_490--Hb_001021_100 Hb_000035_490--Hb_132840_020 Hb_001863_340 Hb_001863_340 Hb_000035_490--Hb_001863_340 Hb_011671_110 Hb_011671_110 Hb_000035_490--Hb_011671_110 Hb_013968_010 Hb_013968_010 Hb_002383_050--Hb_013968_010 Hb_007290_070 Hb_007290_070 Hb_002383_050--Hb_007290_070 Hb_000260_160 Hb_000260_160 Hb_002383_050--Hb_000260_160 Hb_001499_070 Hb_001499_070 Hb_002383_050--Hb_001499_070 Hb_000094_150 Hb_000094_150 Hb_002383_050--Hb_000094_150 Hb_001514_240 Hb_001514_240 Hb_002383_050--Hb_001514_240 Hb_000366_050 Hb_000366_050 Hb_011381_070--Hb_000366_050 Hb_001158_120 Hb_001158_120 Hb_011381_070--Hb_001158_120 Hb_002609_290 Hb_002609_290 Hb_011381_070--Hb_002609_290 Hb_001294_040 Hb_001294_040 Hb_011381_070--Hb_001294_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.46936 18.533 19.8629 8.64465 1.96629 2.05285
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.57509 1.3669 0.519606 4.47482 15.2977

CAGE analysis