Hb_001294_040

Information

Type -
Description -
Location Contig1294: 95461-98704
Sequence    

Annotation

kegg
ID rcu:RCOM_1331460
description serine/threonine-protein kinase cx32, putative (EC:2.7.10.1)
nr
ID XP_002521785.1
description serine/threonine-protein kinase cx32, putative [Ricinus communis]
swissprot
ID P46573
description Protein kinase APK1B, chloroplastic OS=Arabidopsis thaliana GN=APK1B PE=2 SV=2
trembl
ID B9S716
description Serine/threonine-protein kinase cx32, putative OS=Ricinus communis GN=RCOM_1331460 PE=3 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08831: 97350-98674
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001294_040 0.0 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
2 Hb_001158_120 0.0932778186 - - PREDICTED: uncharacterized protein LOC105648761 isoform X1 [Jatropha curcas]
3 Hb_011381_070 0.0940626037 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
4 Hb_014361_170 0.1124065166 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 37 [Jatropha curcas]
5 Hb_000366_050 0.1140284946 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
6 Hb_000008_430 0.1195306746 - - PREDICTED: zinc finger CCCH domain-containing protein 24 isoform X1 [Jatropha curcas]
7 Hb_000035_490 0.1340879309 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
8 Hb_005539_100 0.1342185778 - - nucleoside transporter, putative [Ricinus communis]
9 Hb_001021_100 0.1395755525 - - PREDICTED: wee1-like protein kinase [Jatropha curcas]
10 Hb_005214_070 0.1397638879 - - PREDICTED: fatty acid amide hydrolase [Jatropha curcas]
11 Hb_007290_070 0.1398125755 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
12 Hb_002609_290 0.1400250958 - - PREDICTED: non-specific phospholipase C1 [Jatropha curcas]
13 Hb_000111_390 0.1400541525 - - PREDICTED: uncharacterized protein LOC105631262 isoform X1 [Jatropha curcas]
14 Hb_001776_200 0.1498843941 - - PREDICTED: COP9 signalosome complex subunit 2 isoform X2 [Pyrus x bretschneideri]
15 Hb_002095_050 0.1506478269 - - PREDICTED: uncharacterized protein LOC104447479 [Eucalyptus grandis]
16 Hb_132840_020 0.1532542892 - - PREDICTED: protein LHY [Jatropha curcas]
17 Hb_000086_640 0.1575666423 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
18 Hb_000748_110 0.1583025446 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
19 Hb_011671_110 0.1621513271 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
20 Hb_005724_050 0.1650382006 - - -

Gene co-expression network

sample Hb_001294_040 Hb_001294_040 Hb_001158_120 Hb_001158_120 Hb_001294_040--Hb_001158_120 Hb_011381_070 Hb_011381_070 Hb_001294_040--Hb_011381_070 Hb_014361_170 Hb_014361_170 Hb_001294_040--Hb_014361_170 Hb_000366_050 Hb_000366_050 Hb_001294_040--Hb_000366_050 Hb_000008_430 Hb_000008_430 Hb_001294_040--Hb_000008_430 Hb_000035_490 Hb_000035_490 Hb_001294_040--Hb_000035_490 Hb_001158_120--Hb_011381_070 Hb_001158_120--Hb_000366_050 Hb_002609_290 Hb_002609_290 Hb_001158_120--Hb_002609_290 Hb_005539_100 Hb_005539_100 Hb_001158_120--Hb_005539_100 Hb_007483_080 Hb_007483_080 Hb_001158_120--Hb_007483_080 Hb_011381_070--Hb_000366_050 Hb_011381_070--Hb_000035_490 Hb_011381_070--Hb_002609_290 Hb_132840_020 Hb_132840_020 Hb_011381_070--Hb_132840_020 Hb_001040_060 Hb_001040_060 Hb_014361_170--Hb_001040_060 Hb_001627_010 Hb_001627_010 Hb_014361_170--Hb_001627_010 Hb_014361_170--Hb_011381_070 Hb_014361_170--Hb_132840_020 Hb_000111_390 Hb_000111_390 Hb_014361_170--Hb_000111_390 Hb_000366_050--Hb_002609_290 Hb_000366_050--Hb_005539_100 Hb_000329_790 Hb_000329_790 Hb_000366_050--Hb_000329_790 Hb_005724_050 Hb_005724_050 Hb_000008_430--Hb_005724_050 Hb_004032_090 Hb_004032_090 Hb_000008_430--Hb_004032_090 Hb_007290_070 Hb_007290_070 Hb_000008_430--Hb_007290_070 Hb_000008_430--Hb_005539_100 Hb_001205_180 Hb_001205_180 Hb_000008_430--Hb_001205_180 Hb_000086_640 Hb_000086_640 Hb_000035_490--Hb_000086_640 Hb_001021_100 Hb_001021_100 Hb_000035_490--Hb_001021_100 Hb_000035_490--Hb_132840_020 Hb_001863_340 Hb_001863_340 Hb_000035_490--Hb_001863_340 Hb_011671_110 Hb_011671_110 Hb_000035_490--Hb_011671_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.87413 22.8483 33.8164 10.9745 3.12534 1.65226
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.917403 0.582067 0.0876399 11.9626 12.4444

CAGE analysis