Hb_014361_170

Information

Type transcription factor
Description TF Family: LOB
Location Contig14361: 150592-151917
Sequence    

Annotation

kegg
ID rcu:RCOM_0578520
description LOB domain-containing protein, putative
nr
ID XP_012079381.1
description PREDICTED: LOB domain-containing protein 37 [Jatropha curcas]
swissprot
ID Q9SN23
description LOB domain-containing protein 38 OS=Arabidopsis thaliana GN=LBD38 PE=2 SV=1
trembl
ID A0A067K7F7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12518 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11473: 150596-151827
cDNA
(Sanger)
(ID:Location)		 025_D24.ab1: 150980-151827 , 053_K24.ab1: 150943-151827

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014361_170 0.0 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 37 [Jatropha curcas]
2 Hb_001040_060 0.1014362583 - - PREDICTED: CBS domain-containing protein CBSX5-like [Jatropha curcas]
3 Hb_001294_040 0.1124065166 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
4 Hb_001627_010 0.1133978029 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
5 Hb_011381_070 0.1199147102 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
6 Hb_132840_020 0.1221545842 - - PREDICTED: protein LHY [Jatropha curcas]
7 Hb_000111_390 0.1273070199 - - PREDICTED: uncharacterized protein LOC105631262 isoform X1 [Jatropha curcas]
8 Hb_001158_120 0.1275093614 - - PREDICTED: uncharacterized protein LOC105648761 isoform X1 [Jatropha curcas]
9 Hb_002095_050 0.1373323263 - - PREDICTED: uncharacterized protein LOC104447479 [Eucalyptus grandis]
10 Hb_001318_150 0.1428369429 - - PREDICTED: shaggy-related protein kinase alpha-like [Jatropha curcas]
11 Hb_086639_050 0.1438974646 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
12 Hb_000495_050 0.1442459249 - - hypothetical protein JCGZ_25174 [Jatropha curcas]
13 Hb_000366_050 0.1446163392 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
14 Hb_054865_050 0.1473680488 - - calcium-dependent protein kinase, putative [Ricinus communis]
15 Hb_000035_490 0.1475214019 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
16 Hb_002609_290 0.1483595575 - - PREDICTED: non-specific phospholipase C1 [Jatropha curcas]
17 Hb_007224_010 0.1493801028 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
18 Hb_000086_640 0.1508823767 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
19 Hb_000329_790 0.1531570462 - - PREDICTED: uncharacterized protein LOC105643367 [Jatropha curcas]
20 Hb_028487_040 0.1544008235 - - hypothetical protein POPTR_0010s11910g [Populus trichocarpa]

Gene co-expression network

sample Hb_014361_170 Hb_014361_170 Hb_001040_060 Hb_001040_060 Hb_014361_170--Hb_001040_060 Hb_001294_040 Hb_001294_040 Hb_014361_170--Hb_001294_040 Hb_001627_010 Hb_001627_010 Hb_014361_170--Hb_001627_010 Hb_011381_070 Hb_011381_070 Hb_014361_170--Hb_011381_070 Hb_132840_020 Hb_132840_020 Hb_014361_170--Hb_132840_020 Hb_000111_390 Hb_000111_390 Hb_014361_170--Hb_000111_390 Hb_001040_060--Hb_001627_010 Hb_004970_070 Hb_004970_070 Hb_001040_060--Hb_004970_070 Hb_004679_040 Hb_004679_040 Hb_001040_060--Hb_004679_040 Hb_002217_190 Hb_002217_190 Hb_001040_060--Hb_002217_190 Hb_000567_330 Hb_000567_330 Hb_001040_060--Hb_000567_330 Hb_001158_120 Hb_001158_120 Hb_001294_040--Hb_001158_120 Hb_001294_040--Hb_011381_070 Hb_000366_050 Hb_000366_050 Hb_001294_040--Hb_000366_050 Hb_000008_430 Hb_000008_430 Hb_001294_040--Hb_000008_430 Hb_000035_490 Hb_000035_490 Hb_001294_040--Hb_000035_490 Hb_002014_050 Hb_002014_050 Hb_001627_010--Hb_002014_050 Hb_007224_010 Hb_007224_010 Hb_001627_010--Hb_007224_010 Hb_001627_010--Hb_132840_020 Hb_001294_050 Hb_001294_050 Hb_001627_010--Hb_001294_050 Hb_001519_060 Hb_001519_060 Hb_001627_010--Hb_001519_060 Hb_001627_010--Hb_000111_390 Hb_011381_070--Hb_000366_050 Hb_011381_070--Hb_001158_120 Hb_011381_070--Hb_000035_490 Hb_002609_290 Hb_002609_290 Hb_011381_070--Hb_002609_290 Hb_011381_070--Hb_132840_020 Hb_132840_020--Hb_001294_050 Hb_000086_640 Hb_000086_640 Hb_132840_020--Hb_000086_640 Hb_048476_040 Hb_048476_040 Hb_132840_020--Hb_048476_040 Hb_000329_790 Hb_000329_790 Hb_132840_020--Hb_000329_790 Hb_011671_110 Hb_011671_110 Hb_000111_390--Hb_011671_110 Hb_086639_050 Hb_086639_050 Hb_000111_390--Hb_086639_050 Hb_047442_010 Hb_047442_010 Hb_000111_390--Hb_047442_010 Hb_002249_170 Hb_002249_170 Hb_000111_390--Hb_002249_170 Hb_001318_150 Hb_001318_150 Hb_000111_390--Hb_001318_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.46013 96.4291 166.764 52.395 4.13558 4.24696
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.37715 8.45771 2.53012 44.5662 47.921

CAGE analysis