Hb_002014_050

Information

Type -
Description -
Location Contig2014: 73270-77233
Sequence    

Annotation

kegg
ID pop:POPTR_0018s08800g
description hypothetical protein
nr
ID XP_011043470.1
description PREDICTED: proline-rich receptor-like protein kinase PERK1 isoform X2 [Populus euphratica]
swissprot
ID Q9LV48
description Proline-rich receptor-like protein kinase PERK1 OS=Arabidopsis thaliana GN=PERK1 PE=2 SV=1
trembl
ID U5FG22
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s08800g PE=3 SV=1
Gene Ontology
ID GO:0004674
description proline-rich receptor-like protein kinase perk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20458: 73278-76278
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002014_050 0.0 - - PREDICTED: proline-rich receptor-like protein kinase PERK1 isoform X2 [Populus euphratica]
2 Hb_001627_010 0.0770318854 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
3 Hb_007904_290 0.1191761532 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
4 Hb_001294_050 0.1239648686 desease resistance Gene Name: NB-ARC Disease resistance protein RPP13, putative [Ricinus communis]
5 Hb_002609_290 0.1269638531 - - PREDICTED: non-specific phospholipase C1 [Jatropha curcas]
6 Hb_000071_090 0.1294663297 - - PREDICTED: probable protein phosphatase 2C 4 [Jatropha curcas]
7 Hb_000111_390 0.1343674808 - - PREDICTED: uncharacterized protein LOC105631262 isoform X1 [Jatropha curcas]
8 Hb_132840_020 0.1394797038 - - PREDICTED: protein LHY [Jatropha curcas]
9 Hb_005725_280 0.1407257562 - - PREDICTED: sodium-coupled neutral amino acid transporter 5-like [Jatropha curcas]
10 Hb_001102_090 0.1411437334 - - PREDICTED: mitogen-activated protein kinase 19 [Jatropha curcas]
11 Hb_001519_060 0.1419518899 - - PREDICTED: glutamyl-tRNA reductase 1, chloroplastic-like [Jatropha curcas]
12 Hb_001019_020 0.1420159741 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001396_120 0.142554169 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 16 [Jatropha curcas]
14 Hb_003078_070 0.143339541 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At3g25290 [Jatropha curcas]
15 Hb_089305_010 0.1434181182 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
16 Hb_094437_050 0.14751934 - - PREDICTED: uncharacterized protein LOC105630877 isoform X2 [Jatropha curcas]
17 Hb_011381_070 0.1489219099 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
18 Hb_000336_180 0.1495907335 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007224_010 0.1511803198 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
20 Hb_033053_010 0.1520470496 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]

Gene co-expression network

sample Hb_002014_050 Hb_002014_050 Hb_001627_010 Hb_001627_010 Hb_002014_050--Hb_001627_010 Hb_007904_290 Hb_007904_290 Hb_002014_050--Hb_007904_290 Hb_001294_050 Hb_001294_050 Hb_002014_050--Hb_001294_050 Hb_002609_290 Hb_002609_290 Hb_002014_050--Hb_002609_290 Hb_000071_090 Hb_000071_090 Hb_002014_050--Hb_000071_090 Hb_000111_390 Hb_000111_390 Hb_002014_050--Hb_000111_390 Hb_007224_010 Hb_007224_010 Hb_001627_010--Hb_007224_010 Hb_132840_020 Hb_132840_020 Hb_001627_010--Hb_132840_020 Hb_001627_010--Hb_001294_050 Hb_001519_060 Hb_001519_060 Hb_001627_010--Hb_001519_060 Hb_001627_010--Hb_000111_390 Hb_001430_010 Hb_001430_010 Hb_007904_290--Hb_001430_010 Hb_012272_010 Hb_012272_010 Hb_007904_290--Hb_012272_010 Hb_007904_290--Hb_000071_090 Hb_007904_290--Hb_001627_010 Hb_004970_070 Hb_004970_070 Hb_007904_290--Hb_004970_070 Hb_001102_090 Hb_001102_090 Hb_001294_050--Hb_001102_090 Hb_001294_050--Hb_132840_020 Hb_000336_180 Hb_000336_180 Hb_001294_050--Hb_000336_180 Hb_048476_040 Hb_048476_040 Hb_001294_050--Hb_048476_040 Hb_005725_280 Hb_005725_280 Hb_001294_050--Hb_005725_280 Hb_011381_070 Hb_011381_070 Hb_002609_290--Hb_011381_070 Hb_000366_050 Hb_000366_050 Hb_002609_290--Hb_000366_050 Hb_001158_120 Hb_001158_120 Hb_002609_290--Hb_001158_120 Hb_010812_060 Hb_010812_060 Hb_002609_290--Hb_010812_060 Hb_002997_110 Hb_002997_110 Hb_002609_290--Hb_002997_110 Hb_002609_290--Hb_001627_010 Hb_008406_070 Hb_008406_070 Hb_000071_090--Hb_008406_070 Hb_003078_070 Hb_003078_070 Hb_000071_090--Hb_003078_070 Hb_002374_030 Hb_002374_030 Hb_000071_090--Hb_002374_030 Hb_001769_120 Hb_001769_120 Hb_000071_090--Hb_001769_120 Hb_189208_060 Hb_189208_060 Hb_000071_090--Hb_189208_060 Hb_000985_140 Hb_000985_140 Hb_000071_090--Hb_000985_140 Hb_011671_110 Hb_011671_110 Hb_000111_390--Hb_011671_110 Hb_086639_050 Hb_086639_050 Hb_000111_390--Hb_086639_050 Hb_047442_010 Hb_047442_010 Hb_000111_390--Hb_047442_010 Hb_002249_170 Hb_002249_170 Hb_000111_390--Hb_002249_170 Hb_001318_150 Hb_001318_150 Hb_000111_390--Hb_001318_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.11751 38.3494 49.8061 29.7443 3.29644 0.490383
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.02566 0.892759 1.42789 6.53171 13.027

CAGE analysis