Hb_012272_010

Information

Type -
Description -
Location Contig12272: 10510-12427
Sequence    

Annotation

kegg
ID tcc:TCM_024631
description Leucine-rich repeat containing protein, putative isoform 1
nr
ID KDP43125.1
description hypothetical protein JCGZ_26658 [Jatropha curcas]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID A0A067LF36
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26658 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06923: 11924-12974
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012272_010 0.0 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
2 Hb_005048_120 0.1060847719 - - -
3 Hb_010721_010 0.1196679647 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Populus euphratica]
4 Hb_007904_290 0.1204332755 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
5 Hb_001019_020 0.1214337903 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001189_150 0.1226401424 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 89-like [Jatropha curcas]
7 Hb_002936_030 0.1256985726 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
8 Hb_003633_150 0.1277711553 - - hypothetical protein JCGZ_23296 [Jatropha curcas]
9 Hb_002233_080 0.1281180608 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
10 Hb_001247_160 0.1315856722 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
11 Hb_000210_160 0.1318966661 - - PREDICTED: protein YLS9-like [Jatropha curcas]
12 Hb_001329_080 0.1348534497 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
13 Hb_033053_010 0.1351734776 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
14 Hb_076771_010 0.1355593744 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
15 Hb_002676_110 0.1395010707 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase 2-like [Gossypium raimondii]
16 Hb_164926_050 0.1399613567 - - PREDICTED: subtilisin-like protease SBT3.5 [Jatropha curcas]
17 Hb_182970_010 0.1408458096 - - calmodulin-binding protein 60-D [Populus trichocarpa]
18 Hb_000047_010 0.1443015277 - - PREDICTED: expansin-like A1 [Jatropha curcas]
19 Hb_005282_010 0.1460710473 - - PREDICTED: probable xyloglucan glycosyltransferase 12 [Populus euphratica]
20 Hb_002048_070 0.1470076486 - - hypothetical protein JCGZ_15146 [Jatropha curcas]

Gene co-expression network

sample Hb_012272_010 Hb_012272_010 Hb_005048_120 Hb_005048_120 Hb_012272_010--Hb_005048_120 Hb_010721_010 Hb_010721_010 Hb_012272_010--Hb_010721_010 Hb_007904_290 Hb_007904_290 Hb_012272_010--Hb_007904_290 Hb_001019_020 Hb_001019_020 Hb_012272_010--Hb_001019_020 Hb_001189_150 Hb_001189_150 Hb_012272_010--Hb_001189_150 Hb_002936_030 Hb_002936_030 Hb_012272_010--Hb_002936_030 Hb_005048_120--Hb_002936_030 Hb_005048_120--Hb_010721_010 Hb_001247_160 Hb_001247_160 Hb_005048_120--Hb_001247_160 Hb_094437_050 Hb_094437_050 Hb_005048_120--Hb_094437_050 Hb_005048_120--Hb_007904_290 Hb_023386_060 Hb_023386_060 Hb_010721_010--Hb_023386_060 Hb_002048_070 Hb_002048_070 Hb_010721_010--Hb_002048_070 Hb_001430_010 Hb_001430_010 Hb_010721_010--Hb_001430_010 Hb_002676_110 Hb_002676_110 Hb_010721_010--Hb_002676_110 Hb_011915_020 Hb_011915_020 Hb_010721_010--Hb_011915_020 Hb_001663_090 Hb_001663_090 Hb_010721_010--Hb_001663_090 Hb_002014_050 Hb_002014_050 Hb_007904_290--Hb_002014_050 Hb_007904_290--Hb_001430_010 Hb_000071_090 Hb_000071_090 Hb_007904_290--Hb_000071_090 Hb_001627_010 Hb_001627_010 Hb_007904_290--Hb_001627_010 Hb_004970_070 Hb_004970_070 Hb_007904_290--Hb_004970_070 Hb_001019_020--Hb_094437_050 Hb_002233_080 Hb_002233_080 Hb_001019_020--Hb_002233_080 Hb_001019_020--Hb_001247_160 Hb_000047_010 Hb_000047_010 Hb_001019_020--Hb_000047_010 Hb_001019_020--Hb_011915_020 Hb_001832_070 Hb_001832_070 Hb_001189_150--Hb_001832_070 Hb_000521_100 Hb_000521_100 Hb_001189_150--Hb_000521_100 Hb_003633_150 Hb_003633_150 Hb_001189_150--Hb_003633_150 Hb_000836_220 Hb_000836_220 Hb_001189_150--Hb_000836_220 Hb_003864_020 Hb_003864_020 Hb_001189_150--Hb_003864_020 Hb_002936_030--Hb_001247_160 Hb_007574_050 Hb_007574_050 Hb_002936_030--Hb_007574_050 Hb_005282_010 Hb_005282_010 Hb_002936_030--Hb_005282_010 Hb_003078_070 Hb_003078_070 Hb_002936_030--Hb_003078_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0817637 1.72525 1.30529 1.59865 0.0352874 0.0159922
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0831302 0.0653906 0 0.288252 0.270349

CAGE analysis