Hb_002676_110

Information

Type -
Description -
Location Contig2676: 155803-158150
Sequence    

Annotation

kegg
ID pop:POPTR_0014s14310g
description POPTRDRAFT_572886; brassinosteroid-regulated family protein
nr
ID XP_012481636.1
description PREDICTED: xyloglucan endotransglucosylase/hydrolase 2-like [Gossypium raimondii]
swissprot
ID Q8LG58
description Probable xyloglucan endotransglucosylase/hydrolase protein 16 OS=Arabidopsis thaliana GN=XTH16 PE=2 SV=2
trembl
ID A0A0D2PLY1
description Gossypium raimondii chromosome 5, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_005G025000 PE=4 SV=1
Gene Ontology
ID GO:0005618
description brassinosteroid-regulated protein bru1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27877: 156097-158430 , PASA_asmbl_27878: 156709-157077 , PASA_asmbl_27879: 157636-157867 , PASA_asmbl_27880: 156386-156668
cDNA
(Sanger)
(ID:Location)		 037_F18.ab1: 156097-157811

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002676_110 0.0 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase 2-like [Gossypium raimondii]
2 Hb_001663_090 0.0878875985 - - ribonuclease t2, putative [Ricinus communis]
3 Hb_076771_010 0.0950527944 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
4 Hb_000060_080 0.096405062 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 2 protein, putative [Ricinus communis]
5 Hb_004631_100 0.0979791592 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH96 [Jatropha curcas]
6 Hb_010721_010 0.1039552685 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Populus euphratica]
7 Hb_070634_010 0.1149343736 - - TMV resistance protein N, putative [Ricinus communis]
8 Hb_001198_160 0.1162929072 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
9 Hb_023386_060 0.1166363346 - - PREDICTED: putative glucuronosyltransferase PGSIP8 [Jatropha curcas]
10 Hb_029622_090 0.1172064359 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 2-like [Jatropha curcas]
11 Hb_170632_010 0.1174147962 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
12 Hb_177215_020 0.1202330655 - - acc synthase, putative [Ricinus communis]
13 Hb_028841_010 0.1217131099 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase CES101 [Jatropha curcas]
14 Hb_000028_330 0.1226296988 - - PREDICTED: mitogen-activated protein kinase kinase 9-like [Pyrus x bretschneideri]
15 Hb_002048_070 0.1259443313 - - hypothetical protein JCGZ_15146 [Jatropha curcas]
16 Hb_002739_160 0.1279942208 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
17 Hb_001562_030 0.1283478986 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH35 isoform X1 [Jatropha curcas]
18 Hb_138086_010 0.1289355972 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
19 Hb_000010_220 0.1292125325 - - PREDICTED: uncharacterized protein LOC105640277 [Jatropha curcas]
20 Hb_011915_020 0.1300889309 - - PREDICTED: arogenate dehydratase/prephenate dehydratase 6, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_002676_110 Hb_002676_110 Hb_001663_090 Hb_001663_090 Hb_002676_110--Hb_001663_090 Hb_076771_010 Hb_076771_010 Hb_002676_110--Hb_076771_010 Hb_000060_080 Hb_000060_080 Hb_002676_110--Hb_000060_080 Hb_004631_100 Hb_004631_100 Hb_002676_110--Hb_004631_100 Hb_010721_010 Hb_010721_010 Hb_002676_110--Hb_010721_010 Hb_070634_010 Hb_070634_010 Hb_002676_110--Hb_070634_010 Hb_029622_090 Hb_029622_090 Hb_001663_090--Hb_029622_090 Hb_000028_330 Hb_000028_330 Hb_001663_090--Hb_000028_330 Hb_002739_160 Hb_002739_160 Hb_001663_090--Hb_002739_160 Hb_001663_090--Hb_000060_080 Hb_030827_080 Hb_030827_080 Hb_001663_090--Hb_030827_080 Hb_002233_080 Hb_002233_080 Hb_076771_010--Hb_002233_080 Hb_076771_010--Hb_001663_090 Hb_076771_010--Hb_029622_090 Hb_000010_220 Hb_000010_220 Hb_076771_010--Hb_000010_220 Hb_076771_010--Hb_010721_010 Hb_170632_010 Hb_170632_010 Hb_000060_080--Hb_170632_010 Hb_001562_030 Hb_001562_030 Hb_000060_080--Hb_001562_030 Hb_000060_080--Hb_004631_100 Hb_000975_090 Hb_000975_090 Hb_000060_080--Hb_000975_090 Hb_033053_020 Hb_033053_020 Hb_004631_100--Hb_033053_020 Hb_002888_100 Hb_002888_100 Hb_004631_100--Hb_002888_100 Hb_004659_100 Hb_004659_100 Hb_004631_100--Hb_004659_100 Hb_000111_120 Hb_000111_120 Hb_004631_100--Hb_000111_120 Hb_023386_060 Hb_023386_060 Hb_010721_010--Hb_023386_060 Hb_002048_070 Hb_002048_070 Hb_010721_010--Hb_002048_070 Hb_001430_010 Hb_001430_010 Hb_010721_010--Hb_001430_010 Hb_011915_020 Hb_011915_020 Hb_010721_010--Hb_011915_020 Hb_010721_010--Hb_001663_090 Hb_138086_010 Hb_138086_010 Hb_070634_010--Hb_138086_010 Hb_008806_040 Hb_008806_040 Hb_070634_010--Hb_008806_040 Hb_160653_010 Hb_160653_010 Hb_070634_010--Hb_160653_010 Hb_070634_010--Hb_001430_010 Hb_070634_010--Hb_010721_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.42062 288.45 251.004 340.002 4.57699 1.12487
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.164528 0.258785 0.158089 81.704 33.986

CAGE analysis