Hb_000975_090

Information

Type -
Description -
Location Contig975: 59747-60499
Sequence    

Annotation

kegg
ID rcu:RCOM_0982250
description Zeamatin precursor, putative
nr
ID XP_002531364.1
description Zeamatin precursor, putative [Ricinus communis]
swissprot
ID Q41350
description Osmotin-like protein OS=Solanum lycopersicum PE=1 SV=1
trembl
ID B9SZE5
description Zeamatin, putative OS=Ricinus communis GN=RCOM_0982250 PE=4 SV=1
Gene Ontology
ID GO:0009505
description osmotin-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63998: 59714-60663
cDNA
(Sanger)
(ID:Location)		 048_C15.ab1: 59714-60528

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000975_090 0.0 - - Zeamatin precursor, putative [Ricinus communis]
2 Hb_006916_120 0.0723206142 - - PREDICTED: UDP-arabinopyranose mutase 1 [Jatropha curcas]
3 Hb_170632_010 0.1000355141 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
4 Hb_133508_020 0.1025381495 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
5 Hb_000060_080 0.1066739286 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 2 protein, putative [Ricinus communis]
6 Hb_000631_100 0.1114706347 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Jatropha curcas]
7 Hb_001562_030 0.1147125897 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH35 isoform X1 [Jatropha curcas]
8 Hb_004031_050 0.1209815951 - - sinapyl alcohol dehydrogenase-like protein [Populus tremula x Populus tremuloides]
9 Hb_001198_180 0.121611836 - - RecName: Full=Anthocyanidin 3-O-glucosyltransferase 1; AltName: Full=Flavonol 3-O-glucosyltransferase 1; AltName: Full=UDP-glucose flavonoid 3-O-glucosyltransferase 1 [Manihot esculenta]
10 Hb_096878_010 0.1308626112 - - hypothetical protein POPTR_0112s002001g, partial [Populus trichocarpa]
11 Hb_000635_190 0.1313773159 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103322127 [Prunus mume]
12 Hb_003055_080 0.1347626636 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3 isoform X1 [Jatropha curcas]
13 Hb_071433_010 0.1356336515 - - lipid binding protein, putative [Ricinus communis]
14 Hb_000152_590 0.1364265862 - - PREDICTED: 21 kDa protein [Jatropha curcas]
15 Hb_001247_090 0.1368946186 - - PREDICTED: uncharacterized protein LOC105647395 [Jatropha curcas]
16 Hb_036029_020 0.1369464397 - - PREDICTED: patellin-3-like [Jatropha curcas]
17 Hb_011355_020 0.1379263005 - - extensin, proline-rich protein, putative [Ricinus communis]
18 Hb_006721_060 0.1384949006 - - RnaseH (mitochondrion) [Malus domestica]
19 Hb_087427_010 0.1386893449 - - hypothetical protein PRUPE_ppa007748mg [Prunus persica]
20 Hb_005214_050 0.1389264804 - - PREDICTED: leucine-rich repeat receptor protein kinase MSP1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000975_090 Hb_000975_090 Hb_006916_120 Hb_006916_120 Hb_000975_090--Hb_006916_120 Hb_170632_010 Hb_170632_010 Hb_000975_090--Hb_170632_010 Hb_133508_020 Hb_133508_020 Hb_000975_090--Hb_133508_020 Hb_000060_080 Hb_000060_080 Hb_000975_090--Hb_000060_080 Hb_000631_100 Hb_000631_100 Hb_000975_090--Hb_000631_100 Hb_001562_030 Hb_001562_030 Hb_000975_090--Hb_001562_030 Hb_006916_120--Hb_133508_020 Hb_000152_590 Hb_000152_590 Hb_006916_120--Hb_000152_590 Hb_006916_120--Hb_000631_100 Hb_006351_030 Hb_006351_030 Hb_006916_120--Hb_006351_030 Hb_087427_010 Hb_087427_010 Hb_006916_120--Hb_087427_010 Hb_170632_010--Hb_000060_080 Hb_001198_180 Hb_001198_180 Hb_170632_010--Hb_001198_180 Hb_038718_010 Hb_038718_010 Hb_170632_010--Hb_038718_010 Hb_001663_090 Hb_001663_090 Hb_170632_010--Hb_001663_090 Hb_002676_110 Hb_002676_110 Hb_170632_010--Hb_002676_110 Hb_133508_020--Hb_000152_590 Hb_185830_090 Hb_185830_090 Hb_133508_020--Hb_185830_090 Hb_010672_010 Hb_010672_010 Hb_133508_020--Hb_010672_010 Hb_096878_010 Hb_096878_010 Hb_133508_020--Hb_096878_010 Hb_000060_080--Hb_002676_110 Hb_000060_080--Hb_001663_090 Hb_000060_080--Hb_001562_030 Hb_004631_100 Hb_004631_100 Hb_000060_080--Hb_004631_100 Hb_000411_020 Hb_000411_020 Hb_000631_100--Hb_000411_020 Hb_189208_050 Hb_189208_050 Hb_000631_100--Hb_189208_050 Hb_024868_010 Hb_024868_010 Hb_000631_100--Hb_024868_010 Hb_000631_100--Hb_087427_010 Hb_002641_140 Hb_002641_140 Hb_000631_100--Hb_002641_140 Hb_008021_040 Hb_008021_040 Hb_000631_100--Hb_008021_040 Hb_001562_030--Hb_001198_180 Hb_002888_100 Hb_002888_100 Hb_001562_030--Hb_002888_100 Hb_008725_020 Hb_008725_020 Hb_001562_030--Hb_008725_020 Hb_002739_160 Hb_002739_160 Hb_001562_030--Hb_002739_160 Hb_092975_010 Hb_092975_010 Hb_001562_030--Hb_092975_010 Hb_030827_080 Hb_030827_080 Hb_001562_030--Hb_030827_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.31049 63.0169 123.8 200.913 0.861782 0.243406
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.206977 41.0151 11.5933

CAGE analysis