Hb_189208_050

Information

Type -
Description -
Location Contig189208: 21426-25097
Sequence    

Annotation

kegg
ID rcu:RCOM_1343820
description hypothetical protein
nr
ID XP_012082992.1
description PREDICTED: uncharacterized protein LOC105642694 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JZX4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14104 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18785: 21682-24903 , PASA_asmbl_18786: 24923-25093
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_189208_050 0.0 - - PREDICTED: uncharacterized protein LOC105642694 isoform X2 [Jatropha curcas]
2 Hb_003216_140 0.0755731672 - - F-box protein SNE, putative [Ricinus communis]
3 Hb_000411_020 0.0769353948 - - cytochrome P450, putative [Ricinus communis]
4 Hb_000631_100 0.0770260419 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Jatropha curcas]
5 Hb_002641_140 0.0780757275 - - protein phosphatase 2c, putative [Ricinus communis]
6 Hb_001247_090 0.0837858111 - - PREDICTED: uncharacterized protein LOC105647395 [Jatropha curcas]
7 Hb_024868_010 0.0838343559 - - protein kinase, putative [Ricinus communis]
8 Hb_008021_040 0.085494839 - - PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
9 Hb_000098_260 0.0974544553 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
10 Hb_092975_010 0.1016402925 - - hypothetical protein JCGZ_04359 [Jatropha curcas]
11 Hb_087427_010 0.1019091432 - - hypothetical protein PRUPE_ppa007748mg [Prunus persica]
12 Hb_001645_030 0.1062051208 - - PREDICTED: probable auxin efflux carrier component 1b [Jatropha curcas]
13 Hb_004031_050 0.11053902 - - sinapyl alcohol dehydrogenase-like protein [Populus tremula x Populus tremuloides]
14 Hb_002888_100 0.1111522602 - - PREDICTED: uncharacterized protein LOC103699074, partial [Phoenix dactylifera]
15 Hb_000571_060 0.1172102394 - - PREDICTED: uncharacterized protein LOC105648112 [Jatropha curcas]
16 Hb_000329_720 0.1173070802 transcription factor TF Family: ERF hypothetical protein POPTR_0014s05500g [Populus trichocarpa]
17 Hb_029142_040 0.1178404994 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
18 Hb_005679_120 0.1199005347 - - hypothetical protein RCOM_0284080 [Ricinus communis]
19 Hb_004659_100 0.1207220284 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002304_100 0.1208880376 - - hypothetical protein JCGZ_21524 [Jatropha curcas]

Gene co-expression network

sample Hb_189208_050 Hb_189208_050 Hb_003216_140 Hb_003216_140 Hb_189208_050--Hb_003216_140 Hb_000411_020 Hb_000411_020 Hb_189208_050--Hb_000411_020 Hb_000631_100 Hb_000631_100 Hb_189208_050--Hb_000631_100 Hb_002641_140 Hb_002641_140 Hb_189208_050--Hb_002641_140 Hb_001247_090 Hb_001247_090 Hb_189208_050--Hb_001247_090 Hb_024868_010 Hb_024868_010 Hb_189208_050--Hb_024868_010 Hb_003216_140--Hb_001247_090 Hb_003216_140--Hb_024868_010 Hb_003216_140--Hb_000411_020 Hb_003216_140--Hb_000631_100 Hb_027556_060 Hb_027556_060 Hb_003216_140--Hb_027556_060 Hb_000411_020--Hb_000631_100 Hb_000411_020--Hb_002641_140 Hb_000098_260 Hb_000098_260 Hb_000411_020--Hb_000098_260 Hb_005357_120 Hb_005357_120 Hb_000411_020--Hb_005357_120 Hb_000631_100--Hb_024868_010 Hb_087427_010 Hb_087427_010 Hb_000631_100--Hb_087427_010 Hb_000631_100--Hb_002641_140 Hb_008021_040 Hb_008021_040 Hb_000631_100--Hb_008021_040 Hb_002641_140--Hb_008021_040 Hb_002641_140--Hb_000098_260 Hb_002641_140--Hb_005357_120 Hb_012787_060 Hb_012787_060 Hb_002641_140--Hb_012787_060 Hb_002304_100 Hb_002304_100 Hb_001247_090--Hb_002304_100 Hb_000568_020 Hb_000568_020 Hb_001247_090--Hb_000568_020 Hb_000834_130 Hb_000834_130 Hb_001247_090--Hb_000834_130 Hb_000152_590 Hb_000152_590 Hb_001247_090--Hb_000152_590 Hb_009838_120 Hb_009838_120 Hb_024868_010--Hb_009838_120 Hb_001645_030 Hb_001645_030 Hb_024868_010--Hb_001645_030 Hb_009627_020 Hb_009627_020 Hb_024868_010--Hb_009627_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0330923 1.11796 1.94614 4.04494 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.41486 0.665458

CAGE analysis