Hb_003216_140

Information

Type -
Description -
Location Contig3216: 147694-148212
Sequence    

Annotation

kegg
ID rcu:RCOM_0348110
description F-box protein SNE, putative
nr
ID XP_002530225.1
description F-box protein SNE, putative [Ricinus communis]
swissprot
ID Q9LUB6
description F-box protein SNE OS=Arabidopsis thaliana GN=SNE PE=1 SV=1
trembl
ID B9SW56
description F-box protein SNE, putative OS=Ricinus communis GN=RCOM_0348110 PE=4 SV=1
Gene Ontology
ID GO:0019005
description f-box protein sne

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34027: 147571-148304
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003216_140 0.0 - - F-box protein SNE, putative [Ricinus communis]
2 Hb_189208_050 0.0755731672 - - PREDICTED: uncharacterized protein LOC105642694 isoform X2 [Jatropha curcas]
3 Hb_001247_090 0.0797238606 - - PREDICTED: uncharacterized protein LOC105647395 [Jatropha curcas]
4 Hb_024868_010 0.0879766369 - - protein kinase, putative [Ricinus communis]
5 Hb_000411_020 0.0883078451 - - cytochrome P450, putative [Ricinus communis]
6 Hb_000631_100 0.0970268962 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Jatropha curcas]
7 Hb_027556_060 0.0988507348 - - hypothetical protein POPTR_0001s03520g [Populus trichocarpa]
8 Hb_005679_120 0.102692295 - - hypothetical protein RCOM_0284080 [Ricinus communis]
9 Hb_001645_030 0.1096306345 - - PREDICTED: probable auxin efflux carrier component 1b [Jatropha curcas]
10 Hb_002304_100 0.1101964198 - - hypothetical protein JCGZ_21524 [Jatropha curcas]
11 Hb_000479_230 0.1133720829 - - hypothetical protein JCGZ_19903 [Jatropha curcas]
12 Hb_002641_140 0.1138755528 - - protein phosphatase 2c, putative [Ricinus communis]
13 Hb_146901_020 0.1214418828 - - -
14 Hb_009627_020 0.1220077421 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 34 [Jatropha curcas]
15 Hb_008021_040 0.1242557724 - - PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
16 Hb_005357_120 0.1256833291 transcription factor TF Family: MYB-related -
17 Hb_009838_120 0.1272772185 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
18 Hb_006916_120 0.1346858598 - - PREDICTED: UDP-arabinopyranose mutase 1 [Jatropha curcas]
19 Hb_000152_590 0.1350438861 - - PREDICTED: 21 kDa protein [Jatropha curcas]
20 Hb_003875_040 0.1395567632 - - PREDICTED: endoglucanase 11-like [Jatropha curcas]

Gene co-expression network

sample Hb_003216_140 Hb_003216_140 Hb_189208_050 Hb_189208_050 Hb_003216_140--Hb_189208_050 Hb_001247_090 Hb_001247_090 Hb_003216_140--Hb_001247_090 Hb_024868_010 Hb_024868_010 Hb_003216_140--Hb_024868_010 Hb_000411_020 Hb_000411_020 Hb_003216_140--Hb_000411_020 Hb_000631_100 Hb_000631_100 Hb_003216_140--Hb_000631_100 Hb_027556_060 Hb_027556_060 Hb_003216_140--Hb_027556_060 Hb_189208_050--Hb_000411_020 Hb_189208_050--Hb_000631_100 Hb_002641_140 Hb_002641_140 Hb_189208_050--Hb_002641_140 Hb_189208_050--Hb_001247_090 Hb_189208_050--Hb_024868_010 Hb_002304_100 Hb_002304_100 Hb_001247_090--Hb_002304_100 Hb_000568_020 Hb_000568_020 Hb_001247_090--Hb_000568_020 Hb_000834_130 Hb_000834_130 Hb_001247_090--Hb_000834_130 Hb_000152_590 Hb_000152_590 Hb_001247_090--Hb_000152_590 Hb_009838_120 Hb_009838_120 Hb_024868_010--Hb_009838_120 Hb_001645_030 Hb_001645_030 Hb_024868_010--Hb_001645_030 Hb_024868_010--Hb_000631_100 Hb_009627_020 Hb_009627_020 Hb_024868_010--Hb_009627_020 Hb_000411_020--Hb_000631_100 Hb_000411_020--Hb_002641_140 Hb_000098_260 Hb_000098_260 Hb_000411_020--Hb_000098_260 Hb_005357_120 Hb_005357_120 Hb_000411_020--Hb_005357_120 Hb_087427_010 Hb_087427_010 Hb_000631_100--Hb_087427_010 Hb_000631_100--Hb_002641_140 Hb_008021_040 Hb_008021_040 Hb_000631_100--Hb_008021_040 Hb_001776_070 Hb_001776_070 Hb_027556_060--Hb_001776_070 Hb_146901_020 Hb_146901_020 Hb_027556_060--Hb_146901_020 Hb_027556_060--Hb_000152_590 Hb_027556_060--Hb_001247_090 Hb_027556_060--Hb_000411_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.352617 0.719298 1.54319 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.699093 0.187041

CAGE analysis