Hb_009627_020

Information

Type -
Description -
Location Contig9627: 28747-32230
Sequence    

Annotation

kegg
ID pop:POPTR_0015s01610g
description POPTRDRAFT_1100752; hypothetical protein
nr
ID XP_012084535.1
description PREDICTED: probable pectinesterase/pectinesterase inhibitor 34 [Jatropha curcas]
swissprot
ID Q9M3B0
description Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1
trembl
ID A0A067JU95
description Pectinesterase OS=Jatropha curcas GN=JCGZ_20123 PE=3 SV=1
Gene Ontology
ID GO:0005618
description probable pectinesterase pectinesterase inhibitor 34

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63813: 28759-32024
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009627_020 0.0 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 34 [Jatropha curcas]
2 Hb_009838_120 0.071411868 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
3 Hb_000479_230 0.0788404156 - - hypothetical protein JCGZ_19903 [Jatropha curcas]
4 Hb_024868_010 0.0866900032 - - protein kinase, putative [Ricinus communis]
5 Hb_005679_120 0.0879162822 - - hypothetical protein RCOM_0284080 [Ricinus communis]
6 Hb_004659_100 0.0895690336 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000631_100 0.1073764683 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Jatropha curcas]
8 Hb_007625_030 0.1105719201 - - unknown [Medicago truncatula]
9 Hb_000866_320 0.1120081515 - - receptor protein kinase, putative [Ricinus communis]
10 Hb_000454_200 0.1166264041 - - PREDICTED: indole-3-acetic acid-induced protein ARG7 [Jatropha curcas]
11 Hb_008021_040 0.1206007069 - - PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
12 Hb_003216_140 0.1220077421 - - F-box protein SNE, putative [Ricinus communis]
13 Hb_033053_020 0.1230513407 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
14 Hb_189208_050 0.1276201273 - - PREDICTED: uncharacterized protein LOC105642694 isoform X2 [Jatropha curcas]
15 Hb_002236_010 0.1300122463 - - PREDICTED: bidirectional sugar transporter SWEET4 [Jatropha curcas]
16 Hb_003875_040 0.1310009114 - - PREDICTED: endoglucanase 11-like [Jatropha curcas]
17 Hb_087427_010 0.1346194142 - - hypothetical protein PRUPE_ppa007748mg [Prunus persica]
18 Hb_008959_050 0.136040472 transcription factor TF Family: Orphans PREDICTED: late secretory pathway protein AVL9-like isoform X2 [Jatropha curcas]
19 Hb_000111_120 0.1361787806 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
20 Hb_002641_140 0.1368958932 - - protein phosphatase 2c, putative [Ricinus communis]

Gene co-expression network

sample Hb_009627_020 Hb_009627_020 Hb_009838_120 Hb_009838_120 Hb_009627_020--Hb_009838_120 Hb_000479_230 Hb_000479_230 Hb_009627_020--Hb_000479_230 Hb_024868_010 Hb_024868_010 Hb_009627_020--Hb_024868_010 Hb_005679_120 Hb_005679_120 Hb_009627_020--Hb_005679_120 Hb_004659_100 Hb_004659_100 Hb_009627_020--Hb_004659_100 Hb_000631_100 Hb_000631_100 Hb_009627_020--Hb_000631_100 Hb_009838_120--Hb_024868_010 Hb_009838_120--Hb_004659_100 Hb_008021_040 Hb_008021_040 Hb_009838_120--Hb_008021_040 Hb_009838_120--Hb_005679_120 Hb_139461_010 Hb_139461_010 Hb_009838_120--Hb_139461_010 Hb_000479_230--Hb_005679_120 Hb_010164_020 Hb_010164_020 Hb_000479_230--Hb_010164_020 Hb_023956_010 Hb_023956_010 Hb_000479_230--Hb_023956_010 Hb_000676_170 Hb_000676_170 Hb_000479_230--Hb_000676_170 Hb_003216_140 Hb_003216_140 Hb_000479_230--Hb_003216_140 Hb_001645_030 Hb_001645_030 Hb_024868_010--Hb_001645_030 Hb_189208_050 Hb_189208_050 Hb_024868_010--Hb_189208_050 Hb_024868_010--Hb_000631_100 Hb_024868_010--Hb_003216_140 Hb_002236_010 Hb_002236_010 Hb_005679_120--Hb_002236_010 Hb_000454_200 Hb_000454_200 Hb_005679_120--Hb_000454_200 Hb_002553_070 Hb_002553_070 Hb_005679_120--Hb_002553_070 Hb_005679_120--Hb_023956_010 Hb_033053_020 Hb_033053_020 Hb_004659_100--Hb_033053_020 Hb_002897_030 Hb_002897_030 Hb_004659_100--Hb_002897_030 Hb_004659_100--Hb_024868_010 Hb_002325_050 Hb_002325_050 Hb_004659_100--Hb_002325_050 Hb_000411_020 Hb_000411_020 Hb_000631_100--Hb_000411_020 Hb_000631_100--Hb_189208_050 Hb_087427_010 Hb_087427_010 Hb_000631_100--Hb_087427_010 Hb_002641_140 Hb_002641_140 Hb_000631_100--Hb_002641_140 Hb_000631_100--Hb_008021_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.862306 24.1299 24.8304 59.1766 0.197511 0.201968
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.248696 0.090319 0.200561 32.5007 5.55791

CAGE analysis