Hb_000479_230

Information

Type -
Description -
Location Contig479: 175287-179912
Sequence    

Annotation

kegg
ID rcu:RCOM_0169070
description Cyclic nucleotide-gated ion channel, putative
nr
ID KDP27204.1
description hypothetical protein JCGZ_19903 [Jatropha curcas]
swissprot
ID O65718
description Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1
trembl
ID A0A067K612
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19903 PE=4 SV=1
Gene Ontology
ID GO:0005622
description cyclic nucleotide-gated ion channel 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44646: 175241-175591 , PASA_asmbl_44648: 175940-177936
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000479_230 0.0 - - hypothetical protein JCGZ_19903 [Jatropha curcas]
2 Hb_009627_020 0.0788404156 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 34 [Jatropha curcas]
3 Hb_005679_120 0.0820438368 - - hypothetical protein RCOM_0284080 [Ricinus communis]
4 Hb_010164_020 0.1111440955 - - PREDICTED: abscisate beta-glucosyltransferase-like [Jatropha curcas]
5 Hb_023956_010 0.1120251451 - - glutathione s-transferase, putative [Ricinus communis]
6 Hb_000676_170 0.11233836 - - PREDICTED: bifunctional epoxide hydrolase 2 [Jatropha curcas]
7 Hb_003216_140 0.1133720829 - - F-box protein SNE, putative [Ricinus communis]
8 Hb_011129_020 0.1139282206 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
9 Hb_009838_120 0.1176264265 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
10 Hb_005144_080 0.1230360804 - - Serine carboxypeptidase, putative [Ricinus communis]
11 Hb_003964_060 0.1242200973 - - PREDICTED: beta-glucosidase 40 [Jatropha curcas]
12 Hb_005489_120 0.1245505003 - - leucine rich repeat receptor kinase, putative [Ricinus communis]
13 Hb_000454_200 0.1248805481 - - PREDICTED: indole-3-acetic acid-induced protein ARG7 [Jatropha curcas]
14 Hb_024868_010 0.128025967 - - protein kinase, putative [Ricinus communis]
15 Hb_002236_010 0.1303338665 - - PREDICTED: bidirectional sugar transporter SWEET4 [Jatropha curcas]
16 Hb_007625_030 0.1310545301 - - unknown [Medicago truncatula]
17 Hb_000069_520 0.1373243078 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]
18 Hb_000631_100 0.1383863537 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Jatropha curcas]
19 Hb_000070_070 0.1389782532 - - PREDICTED: protein LURP-one-related 17 [Jatropha curcas]
20 Hb_001776_070 0.1397343678 - - PREDICTED: glucan endo-1,3-beta-glucosidase isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000479_230 Hb_000479_230 Hb_009627_020 Hb_009627_020 Hb_000479_230--Hb_009627_020 Hb_005679_120 Hb_005679_120 Hb_000479_230--Hb_005679_120 Hb_010164_020 Hb_010164_020 Hb_000479_230--Hb_010164_020 Hb_023956_010 Hb_023956_010 Hb_000479_230--Hb_023956_010 Hb_000676_170 Hb_000676_170 Hb_000479_230--Hb_000676_170 Hb_003216_140 Hb_003216_140 Hb_000479_230--Hb_003216_140 Hb_009838_120 Hb_009838_120 Hb_009627_020--Hb_009838_120 Hb_024868_010 Hb_024868_010 Hb_009627_020--Hb_024868_010 Hb_009627_020--Hb_005679_120 Hb_004659_100 Hb_004659_100 Hb_009627_020--Hb_004659_100 Hb_000631_100 Hb_000631_100 Hb_009627_020--Hb_000631_100 Hb_002236_010 Hb_002236_010 Hb_005679_120--Hb_002236_010 Hb_000454_200 Hb_000454_200 Hb_005679_120--Hb_000454_200 Hb_002553_070 Hb_002553_070 Hb_005679_120--Hb_002553_070 Hb_005679_120--Hb_023956_010 Hb_001776_070 Hb_001776_070 Hb_010164_020--Hb_001776_070 Hb_002871_050 Hb_002871_050 Hb_010164_020--Hb_002871_050 Hb_000111_120 Hb_000111_120 Hb_010164_020--Hb_000111_120 Hb_011129_020 Hb_011129_020 Hb_010164_020--Hb_011129_020 Hb_000509_090 Hb_000509_090 Hb_010164_020--Hb_000509_090 Hb_003847_050 Hb_003847_050 Hb_023956_010--Hb_003847_050 Hb_023956_010--Hb_002553_070 Hb_006846_030 Hb_006846_030 Hb_023956_010--Hb_006846_030 Hb_012787_050 Hb_012787_050 Hb_023956_010--Hb_012787_050 Hb_023956_010--Hb_002236_010 Hb_019026_050 Hb_019026_050 Hb_023956_010--Hb_019026_050 Hb_002374_060 Hb_002374_060 Hb_000676_170--Hb_002374_060 Hb_005489_120 Hb_005489_120 Hb_000676_170--Hb_005489_120 Hb_000069_520 Hb_000069_520 Hb_000676_170--Hb_000069_520 Hb_003964_060 Hb_003964_060 Hb_000676_170--Hb_003964_060 Hb_003266_060 Hb_003266_060 Hb_000676_170--Hb_003266_060 Hb_189208_050 Hb_189208_050 Hb_003216_140--Hb_189208_050 Hb_001247_090 Hb_001247_090 Hb_003216_140--Hb_001247_090 Hb_003216_140--Hb_024868_010 Hb_000411_020 Hb_000411_020 Hb_003216_140--Hb_000411_020 Hb_003216_140--Hb_000631_100 Hb_027556_060 Hb_027556_060 Hb_003216_140--Hb_027556_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0322109 3.15314 3.8415 8.7466 0.015599 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0287677 0.0274029 6.4045 0.886021

CAGE analysis