Hb_002553_070

Information

Type -
Description -
Location Contig2553: 42853-43926
Sequence    

Annotation

kegg
ID tcc:TCM_020868
description RING/U-box superfamily protein
nr
ID XP_012069808.1
description PREDICTED: RING-H2 finger protein ATL16 [Jatropha curcas]
swissprot
ID P93823
description RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2 SV=1
trembl
ID A0A067L740
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02313 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl16-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002553_070 0.0 - - PREDICTED: RING-H2 finger protein ATL16 [Jatropha curcas]
2 Hb_002236_010 0.0623362777 - - PREDICTED: bidirectional sugar transporter SWEET4 [Jatropha curcas]
3 Hb_023956_010 0.0740011784 - - glutathione s-transferase, putative [Ricinus communis]
4 Hb_000571_060 0.096170422 - - PREDICTED: uncharacterized protein LOC105648112 [Jatropha curcas]
5 Hb_019026_050 0.0981845872 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005679_120 0.1012631817 - - hypothetical protein RCOM_0284080 [Ricinus communis]
7 Hb_006846_030 0.1020798479 - - respiratory burst oxidase A [Manihot esculenta]
8 Hb_000181_260 0.1025482293 - - PREDICTED: uncharacterized protein LOC105139156 [Populus euphratica]
9 Hb_003847_050 0.1029060109 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
10 Hb_000120_320 0.1034221923 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_007625_030 0.1041535212 - - unknown [Medicago truncatula]
12 Hb_000070_070 0.1066934322 - - PREDICTED: protein LURP-one-related 17 [Jatropha curcas]
13 Hb_007237_080 0.1129349657 - - amino acid transporter, putative [Ricinus communis]
14 Hb_002811_110 0.1135697103 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
15 Hb_007632_130 0.1183817066 - - PREDICTED: nudix hydrolase 10-like isoform X1 [Jatropha curcas]
16 Hb_012787_060 0.1188715741 - - PREDICTED: glutathione S-transferase U17-like [Prunus mume]
17 Hb_001141_160 0.1209435996 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
18 Hb_012787_050 0.1225118858 - - PREDICTED: glutathione S-transferase U18-like [Jatropha curcas]
19 Hb_002641_140 0.1239876301 - - protein phosphatase 2c, putative [Ricinus communis]
20 Hb_032260_130 0.1243540215 - - hypothetical protein POPTR_0003s13800g [Populus trichocarpa]

Gene co-expression network

sample Hb_002553_070 Hb_002553_070 Hb_002236_010 Hb_002236_010 Hb_002553_070--Hb_002236_010 Hb_023956_010 Hb_023956_010 Hb_002553_070--Hb_023956_010 Hb_000571_060 Hb_000571_060 Hb_002553_070--Hb_000571_060 Hb_019026_050 Hb_019026_050 Hb_002553_070--Hb_019026_050 Hb_005679_120 Hb_005679_120 Hb_002553_070--Hb_005679_120 Hb_006846_030 Hb_006846_030 Hb_002553_070--Hb_006846_030 Hb_000070_070 Hb_000070_070 Hb_002236_010--Hb_000070_070 Hb_002236_010--Hb_005679_120 Hb_002236_010--Hb_023956_010 Hb_002236_010--Hb_000571_060 Hb_007625_030 Hb_007625_030 Hb_002236_010--Hb_007625_030 Hb_003847_050 Hb_003847_050 Hb_023956_010--Hb_003847_050 Hb_023956_010--Hb_006846_030 Hb_012787_050 Hb_012787_050 Hb_023956_010--Hb_012787_050 Hb_023956_010--Hb_019026_050 Hb_002811_110 Hb_002811_110 Hb_000571_060--Hb_002811_110 Hb_000181_260 Hb_000181_260 Hb_000571_060--Hb_000181_260 Hb_007237_080 Hb_007237_080 Hb_000571_060--Hb_007237_080 Hb_008725_020 Hb_008725_020 Hb_000571_060--Hb_008725_020 Hb_019026_050--Hb_003847_050 Hb_019026_050--Hb_006846_030 Hb_000120_320 Hb_000120_320 Hb_019026_050--Hb_000120_320 Hb_007632_130 Hb_007632_130 Hb_019026_050--Hb_007632_130 Hb_000479_230 Hb_000479_230 Hb_005679_120--Hb_000479_230 Hb_009627_020 Hb_009627_020 Hb_005679_120--Hb_009627_020 Hb_000454_200 Hb_000454_200 Hb_005679_120--Hb_000454_200 Hb_005679_120--Hb_023956_010 Hb_006846_030--Hb_003847_050 Hb_006846_030--Hb_012787_050 Hb_001568_010 Hb_001568_010 Hb_006846_030--Hb_001568_010 Hb_002448_020 Hb_002448_020 Hb_006846_030--Hb_002448_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.47078 1.16789 3.57876 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.16857 1.12539

CAGE analysis