Hb_002448_020

Information

Type transcription factor
Description TF Family: SBP
Location Contig2448: 59175-60941
Sequence    

Annotation

kegg
ID rcu:RCOM_1173370
description Squamosa promoter-binding protein, putative
nr
ID XP_002517882.1
description Squamosa promoter-binding protein, putative [Ricinus communis]
swissprot
ID Q9S7A9
description Squamosa promoter-binding-like protein 4 OS=Arabidopsis thaliana GN=SPL4 PE=1 SV=1
trembl
ID B9RVW3
description Squamosa promoter-binding protein, putative OS=Ricinus communis GN=RCOM_1173370 PE=4 SV=1
Gene Ontology
ID GO:0005634
description squamosa promoter-binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25535: 60170-60545 , PASA_asmbl_25536: 59168-60866
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002448_020 0.0 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
2 Hb_006846_030 0.0849853675 - - respiratory burst oxidase A [Manihot esculenta]
3 Hb_065521_010 0.0871694968 - - PREDICTED: probable metal-nicotianamine transporter YSL5 [Jatropha curcas]
4 Hb_007386_030 0.0999140558 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
5 Hb_003847_050 0.1001477357 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
6 Hb_007875_020 0.1014051905 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
7 Hb_001114_120 0.1049373553 - - protein with unknown function [Ricinus communis]
8 Hb_001040_200 0.1068467801 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
9 Hb_000014_080 0.1098116661 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Jatropha curcas]
10 Hb_001568_010 0.1106018792 - - conserved hypothetical protein [Ricinus communis]
11 Hb_029510_090 0.1111118993 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
12 Hb_022250_160 0.1115693015 - - respiratory burst oxidase A [Manihot esculenta]
13 Hb_000112_050 0.1124579097 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]
14 Hb_019026_050 0.1166156055 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000258_210 0.1194171991 - - prenyl-dependent CAAX protease, putative [Ricinus communis]
16 Hb_000155_040 0.1226968435 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
17 Hb_008566_080 0.1262135095 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
18 Hb_168319_060 0.1287349544 - - PREDICTED: cytochrome P450 CYP749A22-like [Populus euphratica]
19 Hb_014967_020 0.1293388504 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_085315_010 0.1301236872 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]

Gene co-expression network

sample Hb_002448_020 Hb_002448_020 Hb_006846_030 Hb_006846_030 Hb_002448_020--Hb_006846_030 Hb_065521_010 Hb_065521_010 Hb_002448_020--Hb_065521_010 Hb_007386_030 Hb_007386_030 Hb_002448_020--Hb_007386_030 Hb_003847_050 Hb_003847_050 Hb_002448_020--Hb_003847_050 Hb_007875_020 Hb_007875_020 Hb_002448_020--Hb_007875_020 Hb_001114_120 Hb_001114_120 Hb_002448_020--Hb_001114_120 Hb_006846_030--Hb_003847_050 Hb_012787_050 Hb_012787_050 Hb_006846_030--Hb_012787_050 Hb_023956_010 Hb_023956_010 Hb_006846_030--Hb_023956_010 Hb_001568_010 Hb_001568_010 Hb_006846_030--Hb_001568_010 Hb_019026_050 Hb_019026_050 Hb_006846_030--Hb_019026_050 Hb_065521_010--Hb_007875_020 Hb_029510_090 Hb_029510_090 Hb_065521_010--Hb_029510_090 Hb_168319_060 Hb_168319_060 Hb_065521_010--Hb_168319_060 Hb_014967_020 Hb_014967_020 Hb_065521_010--Hb_014967_020 Hb_065521_010--Hb_007386_030 Hb_000594_160 Hb_000594_160 Hb_007386_030--Hb_000594_160 Hb_007386_030--Hb_007875_020 Hb_005731_070 Hb_005731_070 Hb_007386_030--Hb_005731_070 Hb_001040_200 Hb_001040_200 Hb_007386_030--Hb_001040_200 Hb_008566_080 Hb_008566_080 Hb_007386_030--Hb_008566_080 Hb_003847_050--Hb_023956_010 Hb_003847_050--Hb_001568_010 Hb_003847_050--Hb_012787_050 Hb_003847_050--Hb_019026_050 Hb_007017_100 Hb_007017_100 Hb_007875_020--Hb_007017_100 Hb_007875_020--Hb_029510_090 Hb_007875_020--Hb_168319_060 Hb_002307_010 Hb_002307_010 Hb_001114_120--Hb_002307_010 Hb_000112_050 Hb_000112_050 Hb_001114_120--Hb_000112_050 Hb_000203_080 Hb_000203_080 Hb_001114_120--Hb_000203_080 Hb_001114_120--Hb_003847_050 Hb_001114_120--Hb_007386_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.93895 5.69372 15.2122 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.218781 0.129045 0.0788442 16.9613 9.19776

CAGE analysis