Hb_029510_090

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig29510: 56670-59780
Sequence    

Annotation

kegg
ID rcu:RCOM_0898870
description Disease resistance protein RFL1, putative (EC:3.1.3.16)
nr
ID XP_012073245.1
description PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
swissprot
ID Q8RXS5
description Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2
trembl
ID A0A067KLL6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06192 PE=4 SV=1
Gene Ontology
ID GO:0005515
description probable disease resistance protein at5g63020

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029510_090 0.0 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
2 Hb_007875_020 0.0859273805 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
3 Hb_065521_010 0.0868257635 - - PREDICTED: probable metal-nicotianamine transporter YSL5 [Jatropha curcas]
4 Hb_168319_060 0.0962521993 - - PREDICTED: cytochrome P450 CYP749A22-like [Populus euphratica]
5 Hb_007386_030 0.1056555008 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
6 Hb_002448_020 0.1111118993 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
7 Hb_000254_060 0.120263685 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001040_200 0.1228656093 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
9 Hb_000112_050 0.1230691345 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]
10 Hb_007017_100 0.1252670241 - - PREDICTED: uncharacterized protein LOC105649804 isoform X1 [Jatropha curcas]
11 Hb_003398_090 0.1296213768 - - PREDICTED: expansin-A4 [Jatropha curcas]
12 Hb_000127_080 0.1298465749 - - hypothetical protein POPTR_0005s21760g [Populus trichocarpa]
13 Hb_006501_100 0.1320808958 - - malic enzyme, putative [Ricinus communis]
14 Hb_001971_050 0.1353991611 - - WD-repeat protein, putative [Ricinus communis]
15 Hb_003913_060 0.1358768227 - - ATP binding protein, putative [Ricinus communis]
16 Hb_004282_010 0.1388457894 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
17 Hb_000258_210 0.1402612823 - - prenyl-dependent CAAX protease, putative [Ricinus communis]
18 Hb_001568_010 0.1417252449 - - conserved hypothetical protein [Ricinus communis]
19 Hb_022250_160 0.1448735005 - - respiratory burst oxidase A [Manihot esculenta]
20 Hb_000014_080 0.1464886267 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Jatropha curcas]

Gene co-expression network

sample Hb_029510_090 Hb_029510_090 Hb_007875_020 Hb_007875_020 Hb_029510_090--Hb_007875_020 Hb_065521_010 Hb_065521_010 Hb_029510_090--Hb_065521_010 Hb_168319_060 Hb_168319_060 Hb_029510_090--Hb_168319_060 Hb_007386_030 Hb_007386_030 Hb_029510_090--Hb_007386_030 Hb_002448_020 Hb_002448_020 Hb_029510_090--Hb_002448_020 Hb_000254_060 Hb_000254_060 Hb_029510_090--Hb_000254_060 Hb_007875_020--Hb_065521_010 Hb_007017_100 Hb_007017_100 Hb_007875_020--Hb_007017_100 Hb_007875_020--Hb_007386_030 Hb_007875_020--Hb_168319_060 Hb_007875_020--Hb_002448_020 Hb_065521_010--Hb_002448_020 Hb_065521_010--Hb_168319_060 Hb_014967_020 Hb_014967_020 Hb_065521_010--Hb_014967_020 Hb_065521_010--Hb_007386_030 Hb_004943_010 Hb_004943_010 Hb_168319_060--Hb_004943_010 Hb_060152_010 Hb_060152_010 Hb_168319_060--Hb_060152_010 Hb_168319_060--Hb_000254_060 Hb_000594_160 Hb_000594_160 Hb_007386_030--Hb_000594_160 Hb_005731_070 Hb_005731_070 Hb_007386_030--Hb_005731_070 Hb_001040_200 Hb_001040_200 Hb_007386_030--Hb_001040_200 Hb_008566_080 Hb_008566_080 Hb_007386_030--Hb_008566_080 Hb_006846_030 Hb_006846_030 Hb_002448_020--Hb_006846_030 Hb_002448_020--Hb_007386_030 Hb_003847_050 Hb_003847_050 Hb_002448_020--Hb_003847_050 Hb_001114_120 Hb_001114_120 Hb_002448_020--Hb_001114_120 Hb_001622_020 Hb_001622_020 Hb_000254_060--Hb_001622_020 Hb_001778_040 Hb_001778_040 Hb_000254_060--Hb_001778_040 Hb_000254_060--Hb_065521_010 Hb_000054_130 Hb_000054_130 Hb_000254_060--Hb_000054_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0366317 0.251492 0.515998 1.33603 0 0.00569534
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0109884 0 1.56867 0.961861

CAGE analysis