Hb_002811_110

Information

Type -
Description -
Location Contig2811: 99042-102969
Sequence    

Annotation

kegg
ID rcu:RCOM_1428500
description kinase, putative (EC:2.7.11.25)
nr
ID XP_012089217.1
description PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
swissprot
ID Q9CAV6
description Serine/threonine-protein kinase WNK1 OS=Arabidopsis thaliana GN=WNK1 PE=1 SV=1
trembl
ID A0A067JI52
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23464 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable serine threonine-protein kinase wnk9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29403: 99444-101344
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002811_110 0.0 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
2 Hb_000571_060 0.0514907411 - - PREDICTED: uncharacterized protein LOC105648112 [Jatropha curcas]
3 Hb_000181_260 0.0797037469 - - PREDICTED: uncharacterized protein LOC105139156 [Populus euphratica]
4 Hb_001117_180 0.0828898661 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
5 Hb_000162_070 0.0857562988 - - phospholipase C, putative [Ricinus communis]
6 Hb_007237_080 0.0924396603 - - amino acid transporter, putative [Ricinus communis]
7 Hb_008021_040 0.0950194678 - - PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
8 Hb_008725_020 0.1001307943 - - PREDICTED: cytidine deaminase 1 [Jatropha curcas]
9 Hb_043789_010 0.1053991988 transcription factor TF Family: AP2 hypothetical protein VITISV_034131 [Vitis vinifera]
10 Hb_002592_070 0.1085315496 - - hypothetical protein VITISV_020993 [Vitis vinifera]
11 Hb_139461_010 0.1093777308 desease resistance Gene Name: NB-ARC Cc-nbs-lrr resistance protein, putative [Theobroma cacao]
12 Hb_001048_070 0.1102685012 transcription factor TF Family: HB hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
13 Hb_002236_010 0.110473249 - - PREDICTED: bidirectional sugar transporter SWEET4 [Jatropha curcas]
14 Hb_002553_070 0.1135697103 - - PREDICTED: RING-H2 finger protein ATL16 [Jatropha curcas]
15 Hb_012787_060 0.1152714642 - - PREDICTED: glutathione S-transferase U17-like [Prunus mume]
16 Hb_004659_100 0.1182653636 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002522_040 0.1189830003 - - hypothetical protein JCGZ_04542 [Jatropha curcas]
18 Hb_002518_020 0.1190369335 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
19 Hb_026144_040 0.119676899 - - -
20 Hb_016564_060 0.1205036304 - - PREDICTED: uncharacterized protein LOC105628249 [Jatropha curcas]

Gene co-expression network

sample Hb_002811_110 Hb_002811_110 Hb_000571_060 Hb_000571_060 Hb_002811_110--Hb_000571_060 Hb_000181_260 Hb_000181_260 Hb_002811_110--Hb_000181_260 Hb_001117_180 Hb_001117_180 Hb_002811_110--Hb_001117_180 Hb_000162_070 Hb_000162_070 Hb_002811_110--Hb_000162_070 Hb_007237_080 Hb_007237_080 Hb_002811_110--Hb_007237_080 Hb_008021_040 Hb_008021_040 Hb_002811_110--Hb_008021_040 Hb_002236_010 Hb_002236_010 Hb_000571_060--Hb_002236_010 Hb_002553_070 Hb_002553_070 Hb_000571_060--Hb_002553_070 Hb_000571_060--Hb_000181_260 Hb_000571_060--Hb_007237_080 Hb_008725_020 Hb_008725_020 Hb_000571_060--Hb_008725_020 Hb_139461_010 Hb_139461_010 Hb_000181_260--Hb_139461_010 Hb_000120_320 Hb_000120_320 Hb_000181_260--Hb_000120_320 Hb_000181_260--Hb_008021_040 Hb_000181_260--Hb_002553_070 Hb_154038_040 Hb_154038_040 Hb_001117_180--Hb_154038_040 Hb_027405_010 Hb_027405_010 Hb_001117_180--Hb_027405_010 Hb_001117_180--Hb_000162_070 Hb_002592_070 Hb_002592_070 Hb_001117_180--Hb_002592_070 Hb_002522_040 Hb_002522_040 Hb_001117_180--Hb_002522_040 Hb_026144_040 Hb_026144_040 Hb_000162_070--Hb_026144_040 Hb_008598_010 Hb_008598_010 Hb_000162_070--Hb_008598_010 Hb_000162_070--Hb_007237_080 Hb_000045_080 Hb_000045_080 Hb_000162_070--Hb_000045_080 Hb_000991_080 Hb_000991_080 Hb_000162_070--Hb_000991_080 Hb_007237_080--Hb_026144_040 Hb_002370_050 Hb_002370_050 Hb_007237_080--Hb_002370_050 Hb_001269_400 Hb_001269_400 Hb_007237_080--Hb_001269_400 Hb_002641_140 Hb_002641_140 Hb_008021_040--Hb_002641_140 Hb_008021_040--Hb_139461_010 Hb_189208_050 Hb_189208_050 Hb_008021_040--Hb_189208_050 Hb_024868_010 Hb_024868_010 Hb_008021_040--Hb_024868_010 Hb_001048_070 Hb_001048_070 Hb_008021_040--Hb_001048_070 Hb_029142_040 Hb_029142_040 Hb_008021_040--Hb_029142_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.05683 4.86699 3.40049 12.9104 0.0349452 0.0218094
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0109771 0 4.00902 2.99985

CAGE analysis