Hb_001117_180

Information

Type -
Description -
Location Contig1117: 128125-134605
Sequence    

Annotation

kegg
ID rcu:RCOM_0619440
description hypothetical protein
nr
ID XP_012066726.1
description PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SS97
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0619440 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03544: 128273-129316 , PASA_asmbl_03545: 129750-131741 , PASA_asmbl_03547: 132511-133141
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001117_180 0.0 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
2 Hb_154038_040 0.0751303064 - - nutrient reservoir, putative [Ricinus communis]
3 Hb_002811_110 0.0828898661 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
4 Hb_027405_010 0.0932313251 - - PREDICTED: uncharacterized protein At3g17950-like [Populus euphratica]
5 Hb_000162_070 0.0937709907 - - phospholipase C, putative [Ricinus communis]
6 Hb_002592_070 0.0939027557 - - hypothetical protein VITISV_020993 [Vitis vinifera]
7 Hb_002522_040 0.0945750546 - - hypothetical protein JCGZ_04542 [Jatropha curcas]
8 Hb_000453_290 0.0969597366 - - PREDICTED: dr1-associated corepressor-like [Jatropha curcas]
9 Hb_002518_020 0.1025891138 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
10 Hb_000384_020 0.105337997 - - sucrose phosphate syntase, putative [Ricinus communis]
11 Hb_026144_040 0.1069148997 - - -
12 Hb_002370_050 0.1077024982 - - hypothetical protein JCGZ_18849 [Jatropha curcas]
13 Hb_022693_090 0.1077910276 - - glycosyltransferase, putative [Ricinus communis]
14 Hb_000468_050 0.1083634775 - - -
15 Hb_000571_060 0.1116636338 - - PREDICTED: uncharacterized protein LOC105648112 [Jatropha curcas]
16 Hb_007237_080 0.1123498306 - - amino acid transporter, putative [Ricinus communis]
17 Hb_005000_280 0.1140129142 - - PREDICTED: uncharacterized protein LOC105637905 [Jatropha curcas]
18 Hb_009225_070 0.1156604628 - - tonoplast intrinsic protein, putative [Ricinus communis]
19 Hb_000816_150 0.1190959823 - - oligopeptide transporter, putative [Ricinus communis]
20 Hb_000991_080 0.1193267417 - - kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001117_180 Hb_001117_180 Hb_154038_040 Hb_154038_040 Hb_001117_180--Hb_154038_040 Hb_002811_110 Hb_002811_110 Hb_001117_180--Hb_002811_110 Hb_027405_010 Hb_027405_010 Hb_001117_180--Hb_027405_010 Hb_000162_070 Hb_000162_070 Hb_001117_180--Hb_000162_070 Hb_002592_070 Hb_002592_070 Hb_001117_180--Hb_002592_070 Hb_002522_040 Hb_002522_040 Hb_001117_180--Hb_002522_040 Hb_000028_550 Hb_000028_550 Hb_154038_040--Hb_000028_550 Hb_000384_020 Hb_000384_020 Hb_154038_040--Hb_000384_020 Hb_001688_030 Hb_001688_030 Hb_154038_040--Hb_001688_030 Hb_004558_060 Hb_004558_060 Hb_154038_040--Hb_004558_060 Hb_002518_020 Hb_002518_020 Hb_154038_040--Hb_002518_020 Hb_000571_060 Hb_000571_060 Hb_002811_110--Hb_000571_060 Hb_000181_260 Hb_000181_260 Hb_002811_110--Hb_000181_260 Hb_002811_110--Hb_000162_070 Hb_007237_080 Hb_007237_080 Hb_002811_110--Hb_007237_080 Hb_008021_040 Hb_008021_040 Hb_002811_110--Hb_008021_040 Hb_002384_030 Hb_002384_030 Hb_027405_010--Hb_002384_030 Hb_000076_280 Hb_000076_280 Hb_027405_010--Hb_000076_280 Hb_000453_290 Hb_000453_290 Hb_027405_010--Hb_000453_290 Hb_027400_020 Hb_027400_020 Hb_027405_010--Hb_027400_020 Hb_002370_050 Hb_002370_050 Hb_027405_010--Hb_002370_050 Hb_026144_040 Hb_026144_040 Hb_000162_070--Hb_026144_040 Hb_008598_010 Hb_008598_010 Hb_000162_070--Hb_008598_010 Hb_000162_070--Hb_007237_080 Hb_000045_080 Hb_000045_080 Hb_000162_070--Hb_000045_080 Hb_000991_080 Hb_000991_080 Hb_000162_070--Hb_000991_080 Hb_000468_050 Hb_000468_050 Hb_002592_070--Hb_000468_050 Hb_002592_070--Hb_000453_290 Hb_012553_030 Hb_012553_030 Hb_002592_070--Hb_012553_030 Hb_009225_070 Hb_009225_070 Hb_002592_070--Hb_009225_070 Hb_022693_090 Hb_022693_090 Hb_002592_070--Hb_022693_090 Hb_092975_010 Hb_092975_010 Hb_002522_040--Hb_092975_010 Hb_122951_010 Hb_122951_010 Hb_002522_040--Hb_122951_010 Hb_004031_050 Hb_004031_050 Hb_002522_040--Hb_004031_050 Hb_153180_010 Hb_153180_010 Hb_002522_040--Hb_153180_010 Hb_178049_010 Hb_178049_010 Hb_002522_040--Hb_178049_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0702712 3.65347 2.64493 12.1733 0.011997 0.0351685
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0291694 0.022949 0 2.19675 2.93569

CAGE analysis