Hb_000028_550

Information

Type -
Description -
Location Contig28: 569668-570123
Sequence    

Annotation

kegg
ID rcu:RCOM_0776380
description glutamate decarboxylase, putative (EC:4.1.1.15)
nr
ID AFK36358.1
description unknown [Medicago truncatula]
swissprot
ID -
description -
trembl
ID I3S7W6
description Uncharacterized protein OS=Medicago truncatula PE=2 SV=1
Gene Ontology
ID GO:0009506
description glutamate decarboxylase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29240: 569391-589698
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_550 0.0 - - unknown [Medicago truncatula]
2 Hb_154038_040 0.1035061055 - - nutrient reservoir, putative [Ricinus communis]
3 Hb_000028_580 0.1084477553 - - PREDICTED: glutamate decarboxylase 5-like [Jatropha curcas]
4 Hb_004117_020 0.1128284415 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002768_040 0.1197842498 - - conserved hypothetical protein [Ricinus communis]
6 Hb_022693_090 0.1224010689 - - glycosyltransferase, putative [Ricinus communis]
7 Hb_001117_180 0.1232508524 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
8 Hb_002203_020 0.1249582283 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005056_120 0.1277692048 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_000087_190 0.1319592495 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
11 Hb_001360_020 0.1328147074 - - PREDICTED: S-adenosylmethionine synthase 1 [Nelumbo nucifera]
12 Hb_002627_010 0.1377628697 - - PREDICTED: uncharacterized protein LOC105640888 [Jatropha curcas]
13 Hb_035995_010 0.1378233081 - - -
14 Hb_174541_030 0.1379572335 - - Cytochrome P450, family 98, subfamily A, polypeptide 3 [Theobroma cacao]
15 Hb_003607_080 0.1395910277 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
16 Hb_001688_030 0.1397131789 - - hypothetical protein JCGZ_10716 [Jatropha curcas]
17 Hb_002384_030 0.1410541439 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000367_320 0.1424141282 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000457_120 0.1431411913 - - PREDICTED: death-associated protein kinase dapk-1 [Jatropha curcas]
20 Hb_027405_010 0.14576459 - - PREDICTED: uncharacterized protein At3g17950-like [Populus euphratica]

Gene co-expression network

sample Hb_000028_550 Hb_000028_550 Hb_154038_040 Hb_154038_040 Hb_000028_550--Hb_154038_040 Hb_000028_580 Hb_000028_580 Hb_000028_550--Hb_000028_580 Hb_004117_020 Hb_004117_020 Hb_000028_550--Hb_004117_020 Hb_002768_040 Hb_002768_040 Hb_000028_550--Hb_002768_040 Hb_022693_090 Hb_022693_090 Hb_000028_550--Hb_022693_090 Hb_001117_180 Hb_001117_180 Hb_000028_550--Hb_001117_180 Hb_154038_040--Hb_001117_180 Hb_000384_020 Hb_000384_020 Hb_154038_040--Hb_000384_020 Hb_001688_030 Hb_001688_030 Hb_154038_040--Hb_001688_030 Hb_004558_060 Hb_004558_060 Hb_154038_040--Hb_004558_060 Hb_002518_020 Hb_002518_020 Hb_154038_040--Hb_002518_020 Hb_002097_080 Hb_002097_080 Hb_000028_580--Hb_002097_080 Hb_004449_090 Hb_004449_090 Hb_000028_580--Hb_004449_090 Hb_000479_060 Hb_000479_060 Hb_000028_580--Hb_000479_060 Hb_000028_580--Hb_154038_040 Hb_135720_010 Hb_135720_010 Hb_000028_580--Hb_135720_010 Hb_174541_030 Hb_174541_030 Hb_004117_020--Hb_174541_030 Hb_002203_020 Hb_002203_020 Hb_004117_020--Hb_002203_020 Hb_002384_030 Hb_002384_030 Hb_004117_020--Hb_002384_030 Hb_001360_020 Hb_001360_020 Hb_004117_020--Hb_001360_020 Hb_155666_010 Hb_155666_010 Hb_004117_020--Hb_155666_010 Hb_005056_120 Hb_005056_120 Hb_002768_040--Hb_005056_120 Hb_027405_010 Hb_027405_010 Hb_002768_040--Hb_027405_010 Hb_003607_080 Hb_003607_080 Hb_002768_040--Hb_003607_080 Hb_000897_010 Hb_000897_010 Hb_002768_040--Hb_000897_010 Hb_000740_080 Hb_000740_080 Hb_002768_040--Hb_000740_080 Hb_000352_360 Hb_000352_360 Hb_002768_040--Hb_000352_360 Hb_000453_290 Hb_000453_290 Hb_022693_090--Hb_000453_290 Hb_022693_090--Hb_002384_030 Hb_009225_070 Hb_009225_070 Hb_022693_090--Hb_009225_070 Hb_022693_090--Hb_001360_020 Hb_011314_010 Hb_011314_010 Hb_022693_090--Hb_011314_010 Hb_002592_070 Hb_002592_070 Hb_022693_090--Hb_002592_070 Hb_002811_110 Hb_002811_110 Hb_001117_180--Hb_002811_110 Hb_001117_180--Hb_027405_010 Hb_000162_070 Hb_000162_070 Hb_001117_180--Hb_000162_070 Hb_001117_180--Hb_002592_070 Hb_002522_040 Hb_002522_040 Hb_001117_180--Hb_002522_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.13472 15.7136 10.0334 69.7458 0.905989 1.60785
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.25469 0.246387 0 8.68942 16.6654

CAGE analysis