Hb_004117_020

Information

Type -
Description -
Location Contig4117: 9378-13993
Sequence    

Annotation

kegg
ID rcu:RCOM_1028690
description hypothetical protein
nr
ID XP_002526403.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9T0F7
description Glucuronoxylan 4-O-methyltransferase 2 OS=Arabidopsis thaliana GN=GXM2 PE=1 SV=1
trembl
ID B9SK84
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1028690 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40737: 9396-9571
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004117_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_174541_030 0.0891243105 - - Cytochrome P450, family 98, subfamily A, polypeptide 3 [Theobroma cacao]
3 Hb_002203_020 0.0942876924 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002384_030 0.1085754412 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001360_020 0.1089725157 - - PREDICTED: S-adenosylmethionine synthase 1 [Nelumbo nucifera]
6 Hb_000028_550 0.1128284415 - - unknown [Medicago truncatula]
7 Hb_155666_010 0.1151875495 - - hypothetical protein JCGZ_01214 [Jatropha curcas]
8 Hb_003376_140 0.1231780033 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.1 [Jatropha curcas]
9 Hb_002809_080 0.1288133161 - - conserved hypothetical protein [Ricinus communis]
10 Hb_154038_040 0.1309271389 - - nutrient reservoir, putative [Ricinus communis]
11 Hb_141194_020 0.1311875912 - - carbohydrate transporter, putative [Ricinus communis]
12 Hb_002000_100 0.1312008386 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Jatropha curcas]
13 Hb_000076_280 0.1314683486 - - PREDICTED: pectinesterase-like [Populus euphratica]
14 Hb_001269_580 0.1324544607 - - PREDICTED: shikimate O-hydroxycinnamoyltransferase [Jatropha curcas]
15 Hb_023308_010 0.1333273939 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
16 Hb_000103_300 0.1338006368 - - PREDICTED: perakine reductase-like [Jatropha curcas]
17 Hb_142056_010 0.1356958679 - - PREDICTED: MATE efflux family protein 1 isoform X2 [Jatropha curcas]
18 Hb_027405_010 0.1367396412 - - PREDICTED: uncharacterized protein At3g17950-like [Populus euphratica]
19 Hb_001410_080 0.1367924688 - - ring finger protein, putative [Ricinus communis]
20 Hb_022693_090 0.1385995634 - - glycosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004117_020 Hb_004117_020 Hb_174541_030 Hb_174541_030 Hb_004117_020--Hb_174541_030 Hb_002203_020 Hb_002203_020 Hb_004117_020--Hb_002203_020 Hb_002384_030 Hb_002384_030 Hb_004117_020--Hb_002384_030 Hb_001360_020 Hb_001360_020 Hb_004117_020--Hb_001360_020 Hb_000028_550 Hb_000028_550 Hb_004117_020--Hb_000028_550 Hb_155666_010 Hb_155666_010 Hb_004117_020--Hb_155666_010 Hb_030565_100 Hb_030565_100 Hb_174541_030--Hb_030565_100 Hb_000457_120 Hb_000457_120 Hb_174541_030--Hb_000457_120 Hb_000030_130 Hb_000030_130 Hb_174541_030--Hb_000030_130 Hb_174541_030--Hb_002203_020 Hb_000392_540 Hb_000392_540 Hb_174541_030--Hb_000392_540 Hb_005000_280 Hb_005000_280 Hb_002203_020--Hb_005000_280 Hb_002809_080 Hb_002809_080 Hb_002203_020--Hb_002809_080 Hb_000076_280 Hb_000076_280 Hb_002203_020--Hb_000076_280 Hb_001769_070 Hb_001769_070 Hb_002203_020--Hb_001769_070 Hb_027400_020 Hb_027400_020 Hb_002203_020--Hb_027400_020 Hb_008731_010 Hb_008731_010 Hb_002384_030--Hb_008731_010 Hb_002384_030--Hb_001360_020 Hb_027405_010 Hb_027405_010 Hb_002384_030--Hb_027405_010 Hb_022693_090 Hb_022693_090 Hb_002384_030--Hb_022693_090 Hb_002000_100 Hb_002000_100 Hb_002384_030--Hb_002000_100 Hb_000344_030 Hb_000344_030 Hb_002384_030--Hb_000344_030 Hb_001360_020--Hb_002000_100 Hb_142056_010 Hb_142056_010 Hb_001360_020--Hb_142056_010 Hb_002007_330 Hb_002007_330 Hb_001360_020--Hb_002007_330 Hb_000453_290 Hb_000453_290 Hb_001360_020--Hb_000453_290 Hb_001360_020--Hb_008731_010 Hb_154038_040 Hb_154038_040 Hb_000028_550--Hb_154038_040 Hb_000028_580 Hb_000028_580 Hb_000028_550--Hb_000028_580 Hb_002768_040 Hb_002768_040 Hb_000028_550--Hb_002768_040 Hb_000028_550--Hb_022693_090 Hb_001117_180 Hb_001117_180 Hb_000028_550--Hb_001117_180 Hb_001410_080 Hb_001410_080 Hb_155666_010--Hb_001410_080 Hb_012410_010 Hb_012410_010 Hb_155666_010--Hb_012410_010 Hb_141194_020 Hb_141194_020 Hb_155666_010--Hb_141194_020 Hb_002391_240 Hb_002391_240 Hb_155666_010--Hb_002391_240 Hb_002370_050 Hb_002370_050 Hb_155666_010--Hb_002370_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.366705 3.41326 3.1876 25.3268 0.435406 0.214716
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.148292 0.0233336 0.0878254 4.38419 8.02035

CAGE analysis