Hb_001360_020

Information

Type -
Description -
Location Contig1360: 52172-53344
Sequence    

Annotation

kegg
ID rcu:RCOM_1354270
description s-adenosylmethionine synthetase, putative (EC:2.5.1.6)
nr
ID XP_010267208.1
description PREDICTED: S-adenosylmethionine synthase 1 [Nelumbo nucifera]
swissprot
ID Q6SYB9
description S-adenosylmethionine synthase 2 OS=Nicotiana tabacum GN=SAMS2 PE=2 SV=1
trembl
ID A0A068UET8
description S-adenosylmethionine synthase OS=Coffea canephora GN=GSCOC_T00023748001 PE=3 SV=1
Gene Ontology
ID GO:0005737
description s-adenosylmethionine synthase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001360_020 0.0 - - PREDICTED: S-adenosylmethionine synthase 1 [Nelumbo nucifera]
2 Hb_002000_100 0.0670563514 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Jatropha curcas]
3 Hb_002384_030 0.082126837 - - conserved hypothetical protein [Ricinus communis]
4 Hb_142056_010 0.0860216797 - - PREDICTED: MATE efflux family protein 1 isoform X2 [Jatropha curcas]
5 Hb_002007_330 0.0927678835 - - PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5 [Jatropha curcas]
6 Hb_000453_290 0.09469407 - - PREDICTED: dr1-associated corepressor-like [Jatropha curcas]
7 Hb_008731_010 0.0951623558 - - hypothetical protein POPTR_0605s00010g [Populus trichocarpa]
8 Hb_022693_090 0.0970888074 - - glycosyltransferase, putative [Ricinus communis]
9 Hb_001688_030 0.1063995058 - - hypothetical protein JCGZ_10716 [Jatropha curcas]
10 Hb_004117_020 0.1089725157 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007403_100 0.1107615395 - - PREDICTED: probable purple acid phosphatase 20 [Jatropha curcas]
12 Hb_027405_010 0.1130276575 - - PREDICTED: uncharacterized protein At3g17950-like [Populus euphratica]
13 Hb_000344_030 0.1150034286 - - phenylalanine ammonia-lyase 1 [Manihot esculenta]
14 Hb_003126_120 0.1191053041 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Jatropha curcas]
15 Hb_004625_020 0.1214243329 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
16 Hb_002370_050 0.1222564921 - - hypothetical protein JCGZ_18849 [Jatropha curcas]
17 Hb_000457_120 0.1236178171 - - PREDICTED: death-associated protein kinase dapk-1 [Jatropha curcas]
18 Hb_008021_050 0.1249424456 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_001117_180 0.1257266309 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
20 Hb_133492_010 0.1261086638 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_001360_020 Hb_001360_020 Hb_002000_100 Hb_002000_100 Hb_001360_020--Hb_002000_100 Hb_002384_030 Hb_002384_030 Hb_001360_020--Hb_002384_030 Hb_142056_010 Hb_142056_010 Hb_001360_020--Hb_142056_010 Hb_002007_330 Hb_002007_330 Hb_001360_020--Hb_002007_330 Hb_000453_290 Hb_000453_290 Hb_001360_020--Hb_000453_290 Hb_008731_010 Hb_008731_010 Hb_001360_020--Hb_008731_010 Hb_002000_100--Hb_002007_330 Hb_002000_100--Hb_142056_010 Hb_007403_100 Hb_007403_100 Hb_002000_100--Hb_007403_100 Hb_002000_100--Hb_008731_010 Hb_002000_100--Hb_002384_030 Hb_002384_030--Hb_008731_010 Hb_027405_010 Hb_027405_010 Hb_002384_030--Hb_027405_010 Hb_022693_090 Hb_022693_090 Hb_002384_030--Hb_022693_090 Hb_000344_030 Hb_000344_030 Hb_002384_030--Hb_000344_030 Hb_142056_010--Hb_002007_330 Hb_005391_050 Hb_005391_050 Hb_142056_010--Hb_005391_050 Hb_142056_010--Hb_000453_290 Hb_142056_010--Hb_002384_030 Hb_002007_330--Hb_007403_100 Hb_002007_330--Hb_008731_010 Hb_002007_330--Hb_000344_030 Hb_000477_020 Hb_000477_020 Hb_002007_330--Hb_000477_020 Hb_002592_070 Hb_002592_070 Hb_000453_290--Hb_002592_070 Hb_000453_290--Hb_022693_090 Hb_000468_050 Hb_000468_050 Hb_000453_290--Hb_000468_050 Hb_000453_290--Hb_002000_100 Hb_000453_290--Hb_027405_010 Hb_008731_010--Hb_000344_030 Hb_008731_010--Hb_007403_100 Hb_001257_140 Hb_001257_140 Hb_008731_010--Hb_001257_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.132251 9.73166 5.48678 54.7829 0 0.0962571
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.125079 0.131183 0.304683 6.9265 14.9127

CAGE analysis