Hb_000477_020

Information

Type -
Description -
Location Contig477: 34643-34921
Sequence    

Annotation

kegg
ID bdi:104583489
description potassium channel KAT1-like
nr
ID KCW79761.1
description hypothetical protein EUGRSUZ_C011052, partial [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A0A9S2P3
description Kch5 OS=Arundo donax PE=4 SV=1
Gene Ontology
ID GO:0005242
description potassium channel akt1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000477_020 0.0 - - hypothetical protein EUGRSUZ_C011052, partial [Eucalyptus grandis]
2 Hb_001675_020 0.0765772611 - - -
3 Hb_007403_100 0.0818421464 - - PREDICTED: probable purple acid phosphatase 20 [Jatropha curcas]
4 Hb_002007_330 0.0849421389 - - PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5 [Jatropha curcas]
5 Hb_000344_030 0.0901520298 - - phenylalanine ammonia-lyase 1 [Manihot esculenta]
6 Hb_000327_100 0.0970267355 - - hypothetical protein JCGZ_06658 [Jatropha curcas]
7 Hb_002000_100 0.1011307141 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Jatropha curcas]
8 Hb_000659_050 0.101694677 - - PREDICTED: basic blue protein-like [Jatropha curcas]
9 Hb_008731_010 0.1054178083 - - hypothetical protein POPTR_0605s00010g [Populus trichocarpa]
10 Hb_002869_090 0.1169562591 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
11 Hb_142056_010 0.1203233789 - - PREDICTED: MATE efflux family protein 1 isoform X2 [Jatropha curcas]
12 Hb_007237_060 0.1272351151 - - -
13 Hb_001360_020 0.1336282136 - - PREDICTED: S-adenosylmethionine synthase 1 [Nelumbo nucifera]
14 Hb_003212_020 0.1345205037 - - hypothetical protein PHAVU_009G114800g [Phaseolus vulgaris]
15 Hb_003304_090 0.1371537093 - - PREDICTED: uncharacterized protein LOC105633680 [Jatropha curcas]
16 Hb_000910_030 0.1379395743 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001257_140 0.1386021397 - - Gb:AAF02129.1, putative [Theobroma cacao]
18 Hb_000352_360 0.13885542 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
19 Hb_000897_010 0.1421415786 - - hypothetical protein JCGZ_13196 [Jatropha curcas]
20 Hb_002384_030 0.1430224443 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000477_020 Hb_000477_020 Hb_001675_020 Hb_001675_020 Hb_000477_020--Hb_001675_020 Hb_007403_100 Hb_007403_100 Hb_000477_020--Hb_007403_100 Hb_002007_330 Hb_002007_330 Hb_000477_020--Hb_002007_330 Hb_000344_030 Hb_000344_030 Hb_000477_020--Hb_000344_030 Hb_000327_100 Hb_000327_100 Hb_000477_020--Hb_000327_100 Hb_002000_100 Hb_002000_100 Hb_000477_020--Hb_002000_100 Hb_001675_020--Hb_000327_100 Hb_000659_050 Hb_000659_050 Hb_001675_020--Hb_000659_050 Hb_001675_020--Hb_007403_100 Hb_002869_090 Hb_002869_090 Hb_001675_020--Hb_002869_090 Hb_007237_060 Hb_007237_060 Hb_001675_020--Hb_007237_060 Hb_007403_100--Hb_002007_330 Hb_007403_100--Hb_002000_100 Hb_008731_010 Hb_008731_010 Hb_007403_100--Hb_008731_010 Hb_000897_010 Hb_000897_010 Hb_007403_100--Hb_000897_010 Hb_007403_100--Hb_000344_030 Hb_002007_330--Hb_002000_100 Hb_002007_330--Hb_008731_010 Hb_002007_330--Hb_000344_030 Hb_142056_010 Hb_142056_010 Hb_002007_330--Hb_142056_010 Hb_000344_030--Hb_008731_010 Hb_000344_030--Hb_000659_050 Hb_000910_030 Hb_000910_030 Hb_000344_030--Hb_000910_030 Hb_000344_030--Hb_002869_090 Hb_000327_100--Hb_000659_050 Hb_000327_100--Hb_002869_090 Hb_000352_360 Hb_000352_360 Hb_000327_100--Hb_000352_360 Hb_001856_260 Hb_001856_260 Hb_000327_100--Hb_001856_260 Hb_002000_100--Hb_142056_010 Hb_001360_020 Hb_001360_020 Hb_002000_100--Hb_001360_020 Hb_002000_100--Hb_008731_010 Hb_002384_030 Hb_002384_030 Hb_002000_100--Hb_002384_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.92643 1.77721 35.8379 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.35762 0 5.33763 6.86141

CAGE analysis