Hb_000344_030

Information

Type -
Description -
Location Contig344: 79167-83386
Sequence    

Annotation

kegg
ID rcu:RCOM_0262230
description Phenylalanine ammonia-lyase, putative (EC:4.3.1.24)
nr
ID AAK62030.1
description phenylalanine ammonia-lyase 1 [Manihot esculenta]
swissprot
ID Q42667
description Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL6 PE=2 SV=1
trembl
ID Q94C45
description Phenylalanine ammonia-lyase OS=Manihot esculenta GN=PAL1 PE=2 SV=1
Gene Ontology
ID GO:0005737
description phenylalanine ammonia-lyase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35923: 79235-83382
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000344_030 0.0 - - phenylalanine ammonia-lyase 1 [Manihot esculenta]
2 Hb_008731_010 0.0535266741 - - hypothetical protein POPTR_0605s00010g [Populus trichocarpa]
3 Hb_002007_330 0.0685039274 - - PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5 [Jatropha curcas]
4 Hb_000659_050 0.0735911868 - - PREDICTED: basic blue protein-like [Jatropha curcas]
5 Hb_000910_030 0.0838774406 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002869_090 0.0845534389 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
7 Hb_007403_100 0.0867687264 - - PREDICTED: probable purple acid phosphatase 20 [Jatropha curcas]
8 Hb_001257_140 0.0890102178 - - Gb:AAF02129.1, putative [Theobroma cacao]
9 Hb_000477_020 0.0901520298 - - hypothetical protein EUGRSUZ_C011052, partial [Eucalyptus grandis]
10 Hb_002000_100 0.0913184149 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Jatropha curcas]
11 Hb_002384_030 0.0919686857 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003849_170 0.0960556146 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
13 Hb_006386_010 0.0982852118 - - PREDICTED: polygalacturonase QRT3 [Jatropha curcas]
14 Hb_000327_100 0.0989341556 - - hypothetical protein JCGZ_06658 [Jatropha curcas]
15 Hb_003607_090 0.0993776568 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
16 Hb_001675_020 0.1016263277 - - -
17 Hb_002616_020 0.104463403 - - PREDICTED: peroxidase 3 [Jatropha curcas]
18 Hb_000352_360 0.1044894236 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
19 Hb_000163_170 0.1095953948 - - -
20 Hb_006252_070 0.1106865468 - - hypothetical protein JCGZ_17254 [Jatropha curcas]

Gene co-expression network

sample Hb_000344_030 Hb_000344_030 Hb_008731_010 Hb_008731_010 Hb_000344_030--Hb_008731_010 Hb_002007_330 Hb_002007_330 Hb_000344_030--Hb_002007_330 Hb_000659_050 Hb_000659_050 Hb_000344_030--Hb_000659_050 Hb_000910_030 Hb_000910_030 Hb_000344_030--Hb_000910_030 Hb_002869_090 Hb_002869_090 Hb_000344_030--Hb_002869_090 Hb_007403_100 Hb_007403_100 Hb_000344_030--Hb_007403_100 Hb_008731_010--Hb_002007_330 Hb_008731_010--Hb_007403_100 Hb_002384_030 Hb_002384_030 Hb_008731_010--Hb_002384_030 Hb_002000_100 Hb_002000_100 Hb_008731_010--Hb_002000_100 Hb_001257_140 Hb_001257_140 Hb_008731_010--Hb_001257_140 Hb_002007_330--Hb_007403_100 Hb_002007_330--Hb_002000_100 Hb_000477_020 Hb_000477_020 Hb_002007_330--Hb_000477_020 Hb_142056_010 Hb_142056_010 Hb_002007_330--Hb_142056_010 Hb_000659_050--Hb_002869_090 Hb_000659_050--Hb_000910_030 Hb_000327_100 Hb_000327_100 Hb_000659_050--Hb_000327_100 Hb_001675_020 Hb_001675_020 Hb_000659_050--Hb_001675_020 Hb_002616_020 Hb_002616_020 Hb_000659_050--Hb_002616_020 Hb_003607_090 Hb_003607_090 Hb_000910_030--Hb_003607_090 Hb_005332_160 Hb_005332_160 Hb_000910_030--Hb_005332_160 Hb_001410_080 Hb_001410_080 Hb_000910_030--Hb_001410_080 Hb_000910_030--Hb_002869_090 Hb_002869_090--Hb_002616_020 Hb_002869_090--Hb_000327_100 Hb_000352_360 Hb_000352_360 Hb_002869_090--Hb_000352_360 Hb_027400_020 Hb_027400_020 Hb_002869_090--Hb_027400_020 Hb_000561_040 Hb_000561_040 Hb_002869_090--Hb_000561_040 Hb_007403_100--Hb_002000_100 Hb_007403_100--Hb_000477_020 Hb_000897_010 Hb_000897_010 Hb_007403_100--Hb_000897_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.111169 26.7333 33.5545 369.1 0.243732 0.174866
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0150532 0.0573033 43.1229 79.1523

CAGE analysis