Hb_002000_100

Information

Type -
Description -
Location Contig2000: 47125-55203
Sequence    

Annotation

kegg
ID rcu:RCOM_0959480
description Cellulose synthase A catalytic subunit 6 [UDP-forming], putative (EC:2.4.1.12)
nr
ID XP_012080728.1
description PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Jatropha curcas]
swissprot
ID Q9SJ22
description Probable cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Arabidopsis thaliana GN=CESA9 PE=2 SV=1
trembl
ID A0A067K3H7
description Cellulose synthase OS=Jatropha curcas GN=JCGZ_15180 PE=3 SV=1
Gene Ontology
ID GO:0016020
description cellulose synthase a catalytic subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20253: 47221-50835 , PASA_asmbl_20254: 50863-54925
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002000_100 0.0 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Jatropha curcas]
2 Hb_002007_330 0.0502655469 - - PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5 [Jatropha curcas]
3 Hb_142056_010 0.0562489187 - - PREDICTED: MATE efflux family protein 1 isoform X2 [Jatropha curcas]
4 Hb_001360_020 0.0670563514 - - PREDICTED: S-adenosylmethionine synthase 1 [Nelumbo nucifera]
5 Hb_007403_100 0.0671847011 - - PREDICTED: probable purple acid phosphatase 20 [Jatropha curcas]
6 Hb_008731_010 0.0753264797 - - hypothetical protein POPTR_0605s00010g [Populus trichocarpa]
7 Hb_002384_030 0.0899642061 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000344_030 0.0913184149 - - phenylalanine ammonia-lyase 1 [Manihot esculenta]
9 Hb_000453_290 0.0914007161 - - PREDICTED: dr1-associated corepressor-like [Jatropha curcas]
10 Hb_003126_120 0.0995718184 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Jatropha curcas]
11 Hb_000477_020 0.1011307141 - - hypothetical protein EUGRSUZ_C011052, partial [Eucalyptus grandis]
12 Hb_022693_090 0.1042760094 - - glycosyltransferase, putative [Ricinus communis]
13 Hb_004625_020 0.1106895328 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
14 Hb_034688_030 0.1180266935 - - PREDICTED: uncharacterized protein LOC105642049 [Jatropha curcas]
15 Hb_027405_010 0.1206308047 - - PREDICTED: uncharacterized protein At3g17950-like [Populus euphratica]
16 Hb_001675_020 0.1242378895 - - -
17 Hb_000659_050 0.1258131409 - - PREDICTED: basic blue protein-like [Jatropha curcas]
18 Hb_000046_390 0.1285654068 - - PREDICTED: CASP-like protein 1D1 [Jatropha curcas]
19 Hb_001454_350 0.1297042684 - - PREDICTED: uncharacterized protein LOC105643449 [Jatropha curcas]
20 Hb_000367_320 0.1305820798 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002000_100 Hb_002000_100 Hb_002007_330 Hb_002007_330 Hb_002000_100--Hb_002007_330 Hb_142056_010 Hb_142056_010 Hb_002000_100--Hb_142056_010 Hb_001360_020 Hb_001360_020 Hb_002000_100--Hb_001360_020 Hb_007403_100 Hb_007403_100 Hb_002000_100--Hb_007403_100 Hb_008731_010 Hb_008731_010 Hb_002000_100--Hb_008731_010 Hb_002384_030 Hb_002384_030 Hb_002000_100--Hb_002384_030 Hb_002007_330--Hb_007403_100 Hb_002007_330--Hb_008731_010 Hb_000344_030 Hb_000344_030 Hb_002007_330--Hb_000344_030 Hb_000477_020 Hb_000477_020 Hb_002007_330--Hb_000477_020 Hb_002007_330--Hb_142056_010 Hb_142056_010--Hb_001360_020 Hb_005391_050 Hb_005391_050 Hb_142056_010--Hb_005391_050 Hb_000453_290 Hb_000453_290 Hb_142056_010--Hb_000453_290 Hb_142056_010--Hb_002384_030 Hb_001360_020--Hb_002384_030 Hb_001360_020--Hb_002007_330 Hb_001360_020--Hb_000453_290 Hb_001360_020--Hb_008731_010 Hb_007403_100--Hb_008731_010 Hb_007403_100--Hb_000477_020 Hb_000897_010 Hb_000897_010 Hb_007403_100--Hb_000897_010 Hb_007403_100--Hb_000344_030 Hb_008731_010--Hb_000344_030 Hb_008731_010--Hb_002384_030 Hb_001257_140 Hb_001257_140 Hb_008731_010--Hb_001257_140 Hb_027405_010 Hb_027405_010 Hb_002384_030--Hb_027405_010 Hb_022693_090 Hb_022693_090 Hb_002384_030--Hb_022693_090 Hb_002384_030--Hb_000344_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0307773 7.69788 3.27463 49.882 0.0047588 0.0465818
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0323191 0.00847805 0 6.50754 12.1371

CAGE analysis