Hb_002768_040

Information

Type -
Description -
Location Contig2768: 29407-30663
Sequence    

Annotation

kegg
ID rcu:RCOM_1302390
description hypothetical protein
nr
ID XP_002529903.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID B9SV84
description CASP-like protein 2D1 OS=Ricinus communis GN=RCOM_1302390 PE=2 SV=1
trembl
ID A0A067F5Z9
description CASP-like protein OS=Citrus sinensis GN=CISIN_1g029644mg PE=3 SV=1
Gene Ontology
ID GO:0005886
description casp-like protein 2d1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28932: 29432-30545 , PASA_asmbl_28933: 29432-30103 , PASA_asmbl_28935: 31208-49649
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002768_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005056_120 0.0841254474 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_027405_010 0.1026069627 - - PREDICTED: uncharacterized protein At3g17950-like [Populus euphratica]
4 Hb_003607_080 0.1057697931 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
5 Hb_000897_010 0.1095849288 - - hypothetical protein JCGZ_13196 [Jatropha curcas]
6 Hb_000740_080 0.109889563 - - -
7 Hb_000352_360 0.1157226798 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
8 Hb_002616_020 0.1172872185 - - PREDICTED: peroxidase 3 [Jatropha curcas]
9 Hb_000028_550 0.1197842498 - - unknown [Medicago truncatula]
10 Hb_120040_010 0.1197903398 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
11 Hb_010863_020 0.1198599467 - - PREDICTED: BTB/POZ domain-containing protein At1g03010-like isoform X1 [Jatropha curcas]
12 Hb_170077_020 0.1202017827 - - PREDICTED: probable serine incorporator [Jatropha curcas]
13 Hb_007403_100 0.123905065 - - PREDICTED: probable purple acid phosphatase 20 [Jatropha curcas]
14 Hb_000000_300 0.1242078745 - - PREDICTED: pathogenesis-related protein 5 [Jatropha curcas]
15 Hb_008731_010 0.1255340125 - - hypothetical protein POPTR_0605s00010g [Populus trichocarpa]
16 Hb_002627_010 0.1258737615 - - PREDICTED: uncharacterized protein LOC105640888 [Jatropha curcas]
17 Hb_001117_180 0.1274639245 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
18 Hb_005000_280 0.1276658291 - - PREDICTED: uncharacterized protein LOC105637905 [Jatropha curcas]
19 Hb_002007_330 0.1278992319 - - PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5 [Jatropha curcas]
20 Hb_008021_050 0.1279987308 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_002768_040 Hb_002768_040 Hb_005056_120 Hb_005056_120 Hb_002768_040--Hb_005056_120 Hb_027405_010 Hb_027405_010 Hb_002768_040--Hb_027405_010 Hb_003607_080 Hb_003607_080 Hb_002768_040--Hb_003607_080 Hb_000897_010 Hb_000897_010 Hb_002768_040--Hb_000897_010 Hb_000740_080 Hb_000740_080 Hb_002768_040--Hb_000740_080 Hb_000352_360 Hb_000352_360 Hb_002768_040--Hb_000352_360 Hb_006026_020 Hb_006026_020 Hb_005056_120--Hb_006026_020 Hb_002627_010 Hb_002627_010 Hb_005056_120--Hb_002627_010 Hb_009225_070 Hb_009225_070 Hb_005056_120--Hb_009225_070 Hb_001117_180 Hb_001117_180 Hb_005056_120--Hb_001117_180 Hb_000149_020 Hb_000149_020 Hb_005056_120--Hb_000149_020 Hb_002384_030 Hb_002384_030 Hb_027405_010--Hb_002384_030 Hb_000076_280 Hb_000076_280 Hb_027405_010--Hb_000076_280 Hb_027405_010--Hb_001117_180 Hb_000453_290 Hb_000453_290 Hb_027405_010--Hb_000453_290 Hb_027400_020 Hb_027400_020 Hb_027405_010--Hb_027400_020 Hb_002370_050 Hb_002370_050 Hb_027405_010--Hb_002370_050 Hb_008021_050 Hb_008021_050 Hb_003607_080--Hb_008021_050 Hb_000093_010 Hb_000093_010 Hb_003607_080--Hb_000093_010 Hb_005648_020 Hb_005648_020 Hb_003607_080--Hb_005648_020 Hb_005215_050 Hb_005215_050 Hb_003607_080--Hb_005215_050 Hb_170077_020 Hb_170077_020 Hb_003607_080--Hb_170077_020 Hb_003466_010 Hb_003466_010 Hb_003607_080--Hb_003466_010 Hb_007403_100 Hb_007403_100 Hb_000897_010--Hb_007403_100 Hb_000897_010--Hb_000740_080 Hb_000897_010--Hb_000149_020 Hb_000897_010--Hb_000352_360 Hb_002007_330 Hb_002007_330 Hb_000897_010--Hb_002007_330 Hb_019299_020 Hb_019299_020 Hb_000740_080--Hb_019299_020 Hb_000740_080--Hb_000149_020 Hb_004970_100 Hb_004970_100 Hb_000740_080--Hb_004970_100 Hb_000740_080--Hb_000352_360 Hb_002616_020 Hb_002616_020 Hb_000352_360--Hb_002616_020 Hb_001257_140 Hb_001257_140 Hb_000352_360--Hb_001257_140 Hb_002869_090 Hb_002869_090 Hb_000352_360--Hb_002869_090 Hb_000352_360--Hb_170077_020 Hb_003849_170 Hb_003849_170 Hb_000352_360--Hb_003849_170 Hb_000327_100 Hb_000327_100 Hb_000352_360--Hb_000327_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.172473 6.6862 5.74618 42.7361 0.28493 0.155523
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.282201 0.0443862 0 5.47415 5.23228

CAGE analysis