Hb_005648_020

Information

Type -
Description -
Location Contig5648: 20334-24390
Sequence    

Annotation

kegg
ID rcu:RCOM_0339270
description Receptor protein kinase CLAVATA1 precursor, putative (EC:2.7.11.25 1.3.1.74)
nr
ID XP_012079496.1
description PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]
swissprot
ID O49545
description Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1
trembl
ID A0A067KAV0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12604 PE=4 SV=1
Gene Ontology
ID GO:0004672
description leucine-rich repeat receptor-like serine threonine-protein kinase bam1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48965: 20308-23928 , PASA_asmbl_48966: 24201-24570
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005648_020 0.0 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]
2 Hb_003466_010 0.0714951593 - - PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Jatropha curcas]
3 Hb_003607_080 0.0730811526 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
4 Hb_009736_020 0.0789504939 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG13 homolog [Jatropha curcas]
5 Hb_003849_170 0.0816829846 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
6 Hb_000093_010 0.0841842946 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
7 Hb_170077_020 0.085094543 - - PREDICTED: probable serine incorporator [Jatropha curcas]
8 Hb_004558_060 0.0856641373 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-4 [Jatropha curcas]
9 Hb_005215_050 0.0882541119 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250 [Jatropha curcas]
10 Hb_178049_010 0.0903414271 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
11 Hb_002701_030 0.0911918351 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
12 Hb_003090_220 0.0915796046 - - PREDICTED: copper transporter 4 [Jatropha curcas]
13 Hb_004531_160 0.0918035545 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
14 Hb_002918_270 0.0918327044 - - PREDICTED: protein E6-like [Populus euphratica]
15 Hb_001789_230 0.0939866532 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003893_180 0.0977434708 - - PREDICTED: uncharacterized protein LOC105648771 [Jatropha curcas]
17 Hb_008021_050 0.1001577904 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_000395_310 0.1009973927 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
19 Hb_002600_120 0.1019243823 - - hypothetical protein JCGZ_25652 [Jatropha curcas]
20 Hb_000866_130 0.1039629632 - - hypothetical protein JCGZ_14397 [Jatropha curcas]

Gene co-expression network

sample Hb_005648_020 Hb_005648_020 Hb_003466_010 Hb_003466_010 Hb_005648_020--Hb_003466_010 Hb_003607_080 Hb_003607_080 Hb_005648_020--Hb_003607_080 Hb_009736_020 Hb_009736_020 Hb_005648_020--Hb_009736_020 Hb_003849_170 Hb_003849_170 Hb_005648_020--Hb_003849_170 Hb_000093_010 Hb_000093_010 Hb_005648_020--Hb_000093_010 Hb_170077_020 Hb_170077_020 Hb_005648_020--Hb_170077_020 Hb_003466_010--Hb_000093_010 Hb_000866_130 Hb_000866_130 Hb_003466_010--Hb_000866_130 Hb_036520_030 Hb_036520_030 Hb_003466_010--Hb_036520_030 Hb_012132_050 Hb_012132_050 Hb_003466_010--Hb_012132_050 Hb_008021_050 Hb_008021_050 Hb_003466_010--Hb_008021_050 Hb_003607_080--Hb_008021_050 Hb_003607_080--Hb_000093_010 Hb_005215_050 Hb_005215_050 Hb_003607_080--Hb_005215_050 Hb_003607_080--Hb_170077_020 Hb_003607_080--Hb_003466_010 Hb_004558_060 Hb_004558_060 Hb_009736_020--Hb_004558_060 Hb_002171_020 Hb_002171_020 Hb_009736_020--Hb_002171_020 Hb_002918_270 Hb_002918_270 Hb_009736_020--Hb_002918_270 Hb_178049_010 Hb_178049_010 Hb_009736_020--Hb_178049_010 Hb_009252_080 Hb_009252_080 Hb_009736_020--Hb_009252_080 Hb_001257_140 Hb_001257_140 Hb_003849_170--Hb_001257_140 Hb_003849_170--Hb_170077_020 Hb_005144_150 Hb_005144_150 Hb_003849_170--Hb_005144_150 Hb_002616_020 Hb_002616_020 Hb_003849_170--Hb_002616_020 Hb_000352_360 Hb_000352_360 Hb_003849_170--Hb_000352_360 Hb_000093_010--Hb_008021_050 Hb_000395_310 Hb_000395_310 Hb_000093_010--Hb_000395_310 Hb_001688_030 Hb_001688_030 Hb_000093_010--Hb_001688_030 Hb_000813_020 Hb_000813_020 Hb_170077_020--Hb_000813_020 Hb_170077_020--Hb_001257_140 Hb_170077_020--Hb_000352_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.177559 3.45232 9.50783 37.0303 0.057929 0.034326
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.012364 0 0 3.09635 7.99203

CAGE analysis