Hb_009252_080

Information

Type -
Description -
Location Contig9252: 78452-80493
Sequence    

Annotation

kegg
ID rcu:RCOM_1510860
description Polygalacturonase-1 non-catalytic subunit beta precursor, putative
nr
ID XP_002511417.1
description Polygalacturonase-1 non-catalytic subunit beta precursor, putative [Ricinus communis]
swissprot
ID P92982
description Probable polygalacturonase non-catalytic subunit JP630 OS=Arabidopsis thaliana GN=JP630 PE=2 SV=2
trembl
ID B9RB42
description Polygalacturonase-1 non-catalytic subunit beta, putative OS=Ricinus communis GN=RCOM_1510860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009252_080 0.0 - - Polygalacturonase-1 non-catalytic subunit beta precursor, putative [Ricinus communis]
2 Hb_043552_010 0.058746694 - - PREDICTED: pectinesterase/pectinesterase inhibitor PPE8B isoform X1 [Jatropha curcas]
3 Hb_001709_090 0.0616645712 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
4 Hb_025787_020 0.0762403324 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
5 Hb_001056_040 0.078969366 - - hypothetical protein POPTR_0006s04450g [Populus trichocarpa]
6 Hb_000162_190 0.0823968995 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
7 Hb_000345_230 0.0881682655 - - -
8 Hb_003935_040 0.0979426784 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP [Jatropha curcas]
9 Hb_001141_440 0.0998469243 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
10 Hb_005211_170 0.1005265108 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
11 Hb_000333_140 0.10347214 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
12 Hb_000375_260 0.1085111556 - - cyanohydrin UDP-glucosyltransferase UGT85K4 [Manihot esculenta]
13 Hb_009736_020 0.1096871556 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG13 homolog [Jatropha curcas]
14 Hb_003992_020 0.1106357765 - - PREDICTED: phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like [Jatropha curcas]
15 Hb_000020_050 0.1116002471 - - PREDICTED: expansin-A6 [Jatropha curcas]
16 Hb_002045_210 0.1126834461 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
17 Hb_001971_040 0.1142447923 - - PREDICTED: beta-glucosidase 44-like [Jatropha curcas]
18 Hb_002307_150 0.1153608599 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA4-like [Jatropha curcas]
19 Hb_011628_010 0.1163429335 - - tonoplast intrinsic protein, putative [Ricinus communis]
20 Hb_050898_030 0.1170793154 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_009252_080 Hb_009252_080 Hb_043552_010 Hb_043552_010 Hb_009252_080--Hb_043552_010 Hb_001709_090 Hb_001709_090 Hb_009252_080--Hb_001709_090 Hb_025787_020 Hb_025787_020 Hb_009252_080--Hb_025787_020 Hb_001056_040 Hb_001056_040 Hb_009252_080--Hb_001056_040 Hb_000162_190 Hb_000162_190 Hb_009252_080--Hb_000162_190 Hb_000345_230 Hb_000345_230 Hb_009252_080--Hb_000345_230 Hb_043552_010--Hb_001709_090 Hb_000375_260 Hb_000375_260 Hb_043552_010--Hb_000375_260 Hb_043552_010--Hb_000162_190 Hb_000310_040 Hb_000310_040 Hb_043552_010--Hb_000310_040 Hb_003992_020 Hb_003992_020 Hb_043552_010--Hb_003992_020 Hb_001709_090--Hb_000375_260 Hb_001709_090--Hb_001056_040 Hb_001709_090--Hb_000345_230 Hb_002028_270 Hb_002028_270 Hb_001709_090--Hb_002028_270 Hb_001140_300 Hb_001140_300 Hb_025787_020--Hb_001140_300 Hb_025787_020--Hb_000162_190 Hb_025787_020--Hb_001056_040 Hb_025787_020--Hb_000345_230 Hb_025787_020--Hb_001709_090 Hb_001056_040--Hb_001140_300 Hb_174639_010 Hb_174639_010 Hb_001056_040--Hb_174639_010 Hb_002045_210 Hb_002045_210 Hb_001056_040--Hb_002045_210 Hb_001709_120 Hb_001709_120 Hb_001056_040--Hb_001709_120 Hb_003935_040 Hb_003935_040 Hb_000162_190--Hb_003935_040 Hb_001141_440 Hb_001141_440 Hb_000162_190--Hb_001141_440 Hb_000310_110 Hb_000310_110 Hb_000162_190--Hb_000310_110 Hb_159809_040 Hb_159809_040 Hb_000345_230--Hb_159809_040 Hb_000345_230--Hb_003935_040 Hb_000345_230--Hb_001141_440 Hb_000522_160 Hb_000522_160 Hb_000345_230--Hb_000522_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.010957 0.0797195 0.571164 0.999278 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.10149 0.165277

CAGE analysis