Hb_001141_440

Information

Type -
Description -
Location Contig1141: 322681-325843
Sequence    

Annotation

kegg
ID pop:POPTR_0010s09860g
description POPTRDRAFT_1090294; hypothetical protein
nr
ID XP_012069615.1
description PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
swissprot
ID Q55CU8
description Random slug protein 5 OS=Dictyostelium discoideum GN=rsc5 PE=2 SV=1
trembl
ID B9HV57
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s09860g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04289: 322811-323189 , PASA_asmbl_04290: 323265-325284
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001141_440 0.0 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
2 Hb_000853_250 0.0711807792 - - Cellulose synthase A catalytic subunit 3 [UDP-forming], putative [Ricinus communis]
3 Hb_000162_190 0.0867471757 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
4 Hb_000345_230 0.0885585095 - - -
5 Hb_001971_040 0.0952209288 - - PREDICTED: beta-glucosidase 44-like [Jatropha curcas]
6 Hb_000062_280 0.0971132754 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
7 Hb_009252_080 0.0998469243 - - Polygalacturonase-1 non-catalytic subunit beta precursor, putative [Ricinus communis]
8 Hb_002307_150 0.1010663613 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA4-like [Jatropha curcas]
9 Hb_043552_010 0.1034669386 - - PREDICTED: pectinesterase/pectinesterase inhibitor PPE8B isoform X1 [Jatropha curcas]
10 Hb_025787_020 0.1081372398 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
11 Hb_010080_050 0.1089272216 - - PREDICTED: uncharacterized protein LOC105635251 [Jatropha curcas]
12 Hb_005211_170 0.1089788079 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
13 Hb_000020_050 0.1091880095 - - PREDICTED: expansin-A6 [Jatropha curcas]
14 Hb_004055_090 0.1092206725 - - PREDICTED: protein IQ-DOMAIN 1 [Jatropha curcas]
15 Hb_089140_070 0.1104253244 - - PREDICTED: uncharacterized protein LOC105637961 [Jatropha curcas]
16 Hb_001709_090 0.110601771 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
17 Hb_004705_060 0.1132444015 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
18 Hb_006810_040 0.1143609008 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
19 Hb_085829_010 0.1148389118 - - PREDICTED: homeobox protein 2-like [Jatropha curcas]
20 Hb_003935_040 0.1184867361 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP [Jatropha curcas]

Gene co-expression network

sample Hb_001141_440 Hb_001141_440 Hb_000853_250 Hb_000853_250 Hb_001141_440--Hb_000853_250 Hb_000162_190 Hb_000162_190 Hb_001141_440--Hb_000162_190 Hb_000345_230 Hb_000345_230 Hb_001141_440--Hb_000345_230 Hb_001971_040 Hb_001971_040 Hb_001141_440--Hb_001971_040 Hb_000062_280 Hb_000062_280 Hb_001141_440--Hb_000062_280 Hb_009252_080 Hb_009252_080 Hb_001141_440--Hb_009252_080 Hb_000853_250--Hb_000062_280 Hb_004055_090 Hb_004055_090 Hb_000853_250--Hb_004055_090 Hb_000853_250--Hb_000162_190 Hb_000017_250 Hb_000017_250 Hb_000853_250--Hb_000017_250 Hb_025787_020 Hb_025787_020 Hb_000853_250--Hb_025787_020 Hb_003935_040 Hb_003935_040 Hb_000162_190--Hb_003935_040 Hb_000162_190--Hb_025787_020 Hb_000162_190--Hb_009252_080 Hb_043552_010 Hb_043552_010 Hb_000162_190--Hb_043552_010 Hb_000310_110 Hb_000310_110 Hb_000162_190--Hb_000310_110 Hb_159809_040 Hb_159809_040 Hb_000345_230--Hb_159809_040 Hb_000345_230--Hb_003935_040 Hb_000345_230--Hb_009252_080 Hb_001709_090 Hb_001709_090 Hb_000345_230--Hb_001709_090 Hb_000522_160 Hb_000522_160 Hb_000345_230--Hb_000522_160 Hb_006810_040 Hb_006810_040 Hb_001971_040--Hb_006810_040 Hb_002028_270 Hb_002028_270 Hb_001971_040--Hb_002028_270 Hb_089140_070 Hb_089140_070 Hb_001971_040--Hb_089140_070 Hb_006693_010 Hb_006693_010 Hb_001971_040--Hb_006693_010 Hb_010080_050 Hb_010080_050 Hb_001971_040--Hb_010080_050 Hb_000020_050 Hb_000020_050 Hb_001971_040--Hb_000020_050 Hb_001052_020 Hb_001052_020 Hb_000062_280--Hb_001052_020 Hb_165110_010 Hb_165110_010 Hb_000062_280--Hb_165110_010 Hb_000962_060 Hb_000962_060 Hb_000062_280--Hb_000962_060 Hb_000506_050 Hb_000506_050 Hb_000062_280--Hb_000506_050 Hb_009252_080--Hb_043552_010 Hb_009252_080--Hb_001709_090 Hb_009252_080--Hb_025787_020 Hb_001056_040 Hb_001056_040 Hb_009252_080--Hb_001056_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0149109 0.413066 4.41677 7.76947 0.055864 0.0392514
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.13274 0.780768

CAGE analysis