Hb_000162_190

Information

Type -
Description -
Location Contig162: 278246-280899
Sequence    

Annotation

kegg
ID pop:POPTR_0009s13510g
description POPTRDRAFT_721765; hypothetical protein
nr
ID XP_012081744.1
description PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
swissprot
ID P28493
description Pathogenesis-related protein 5 OS=Arabidopsis thaliana GN=At1g75040 PE=1 SV=1
trembl
ID A0A067K080
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18788 PE=4 SV=1
Gene Ontology
ID GO:0048513
description thaumatin-like protein 1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14585: 278191-280816 , PASA_asmbl_14586: 278485-278771
cDNA
(Sanger)
(ID:Location)		 005_J04.ab1: 278191-278365

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000162_190 0.0 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
2 Hb_003935_040 0.0759100258 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP [Jatropha curcas]
3 Hb_025787_020 0.0791731698 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
4 Hb_009252_080 0.0823968995 - - Polygalacturonase-1 non-catalytic subunit beta precursor, putative [Ricinus communis]
5 Hb_001141_440 0.0867471757 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
6 Hb_043552_010 0.091391723 - - PREDICTED: pectinesterase/pectinesterase inhibitor PPE8B isoform X1 [Jatropha curcas]
7 Hb_000310_110 0.0947021651 - - PREDICTED: probable trehalose-phosphate phosphatase F isoform X1 [Jatropha curcas]
8 Hb_015934_080 0.0971813964 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
9 Hb_000345_230 0.0978841975 - - -
10 Hb_002292_080 0.0989310508 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
11 Hb_000853_250 0.1011972579 - - Cellulose synthase A catalytic subunit 3 [UDP-forming], putative [Ricinus communis]
12 Hb_000093_090 0.1026667019 - - PREDICTED: UDP-arabinopyranose mutase 3 [Populus euphratica]
13 Hb_009189_100 0.1026903061 - - PREDICTED: patellin-6 [Jatropha curcas]
14 Hb_000568_020 0.1047810395 - - PREDICTED: probable aquaporin PIP2-5 [Jatropha curcas]
15 Hb_002171_020 0.1050994615 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
16 Hb_000017_250 0.1101878463 - - PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Jatropha curcas]
17 Hb_004055_090 0.1122274646 - - PREDICTED: protein IQ-DOMAIN 1 [Jatropha curcas]
18 Hb_001709_090 0.1122623985 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
19 Hb_009736_020 0.1133712311 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG13 homolog [Jatropha curcas]
20 Hb_000020_050 0.1150326587 - - PREDICTED: expansin-A6 [Jatropha curcas]

Gene co-expression network

sample Hb_000162_190 Hb_000162_190 Hb_003935_040 Hb_003935_040 Hb_000162_190--Hb_003935_040 Hb_025787_020 Hb_025787_020 Hb_000162_190--Hb_025787_020 Hb_009252_080 Hb_009252_080 Hb_000162_190--Hb_009252_080 Hb_001141_440 Hb_001141_440 Hb_000162_190--Hb_001141_440 Hb_043552_010 Hb_043552_010 Hb_000162_190--Hb_043552_010 Hb_000310_110 Hb_000310_110 Hb_000162_190--Hb_000310_110 Hb_000345_230 Hb_000345_230 Hb_003935_040--Hb_000345_230 Hb_003935_040--Hb_000310_110 Hb_000020_050 Hb_000020_050 Hb_003935_040--Hb_000020_050 Hb_015934_080 Hb_015934_080 Hb_003935_040--Hb_015934_080 Hb_009189_100 Hb_009189_100 Hb_003935_040--Hb_009189_100 Hb_025787_020--Hb_009252_080 Hb_001140_300 Hb_001140_300 Hb_025787_020--Hb_001140_300 Hb_001056_040 Hb_001056_040 Hb_025787_020--Hb_001056_040 Hb_025787_020--Hb_000345_230 Hb_001709_090 Hb_001709_090 Hb_025787_020--Hb_001709_090 Hb_009252_080--Hb_043552_010 Hb_009252_080--Hb_001709_090 Hb_009252_080--Hb_001056_040 Hb_009252_080--Hb_000345_230 Hb_000853_250 Hb_000853_250 Hb_001141_440--Hb_000853_250 Hb_001141_440--Hb_000345_230 Hb_001971_040 Hb_001971_040 Hb_001141_440--Hb_001971_040 Hb_000062_280 Hb_000062_280 Hb_001141_440--Hb_000062_280 Hb_001141_440--Hb_009252_080 Hb_043552_010--Hb_001709_090 Hb_000375_260 Hb_000375_260 Hb_043552_010--Hb_000375_260 Hb_000310_040 Hb_000310_040 Hb_043552_010--Hb_000310_040 Hb_003992_020 Hb_003992_020 Hb_043552_010--Hb_003992_020 Hb_000310_110--Hb_009189_100 Hb_032260_060 Hb_032260_060 Hb_000310_110--Hb_032260_060 Hb_007290_050 Hb_007290_050 Hb_000310_110--Hb_007290_050 Hb_000310_110--Hb_000345_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.601609 5.87814 35.7876 72.2179 0.286709 0.0937879
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.154523 0.0607886 0.11488 12.1634 11.519

CAGE analysis