Hb_043552_010

Information

Type -
Description -
Location Contig43552: 1182-4054
Sequence    

Annotation

kegg
ID pop:POPTR_0006s13670g
description Pectinesterase PPE8B precursor family protein
nr
ID XP_012077135.1
description PREDICTED: pectinesterase/pectinesterase inhibitor PPE8B isoform X1 [Jatropha curcas]
swissprot
ID Q43062
description Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1
trembl
ID A0A067KG43
description Pectinesterase OS=Jatropha curcas GN=JCGZ_07554 PE=3 SV=1
Gene Ontology
ID GO:0005618
description pectinesterase pectinesterase inhibitor ppe8b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42440: 1261-4034 , PASA_asmbl_42441: 2692-2860
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_043552_010 0.0 - - PREDICTED: pectinesterase/pectinesterase inhibitor PPE8B isoform X1 [Jatropha curcas]
2 Hb_009252_080 0.058746694 - - Polygalacturonase-1 non-catalytic subunit beta precursor, putative [Ricinus communis]
3 Hb_001709_090 0.079314855 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
4 Hb_000375_260 0.0908294294 - - cyanohydrin UDP-glucosyltransferase UGT85K4 [Manihot esculenta]
5 Hb_000162_190 0.091391723 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
6 Hb_000310_040 0.0954227112 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
7 Hb_003992_020 0.0986207163 - - PREDICTED: phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like [Jatropha curcas]
8 Hb_005211_170 0.0986264654 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
9 Hb_001141_440 0.1034669386 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
10 Hb_000289_020 0.1079804429 - - hypothetical protein CICLE_v10009323mg [Citrus clementina]
11 Hb_000345_230 0.1080615427 - - -
12 Hb_000098_270 0.1096132792 - - PREDICTED: 22.0 kDa class IV heat shock protein [Jatropha curcas]
13 Hb_006120_130 0.1098189813 - - -
14 Hb_003935_040 0.110740874 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP [Jatropha curcas]
15 Hb_000333_140 0.1116328526 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
16 Hb_002307_150 0.1123335556 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA4-like [Jatropha curcas]
17 Hb_002028_270 0.1153311238 - - Pectinesterase-1 precursor, putative [Ricinus communis]
18 Hb_025787_020 0.1179386297 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
19 Hb_009736_020 0.1181476989 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG13 homolog [Jatropha curcas]
20 Hb_000329_720 0.1205729629 transcription factor TF Family: ERF hypothetical protein POPTR_0014s05500g [Populus trichocarpa]

Gene co-expression network

sample Hb_043552_010 Hb_043552_010 Hb_009252_080 Hb_009252_080 Hb_043552_010--Hb_009252_080 Hb_001709_090 Hb_001709_090 Hb_043552_010--Hb_001709_090 Hb_000375_260 Hb_000375_260 Hb_043552_010--Hb_000375_260 Hb_000162_190 Hb_000162_190 Hb_043552_010--Hb_000162_190 Hb_000310_040 Hb_000310_040 Hb_043552_010--Hb_000310_040 Hb_003992_020 Hb_003992_020 Hb_043552_010--Hb_003992_020 Hb_009252_080--Hb_001709_090 Hb_025787_020 Hb_025787_020 Hb_009252_080--Hb_025787_020 Hb_001056_040 Hb_001056_040 Hb_009252_080--Hb_001056_040 Hb_009252_080--Hb_000162_190 Hb_000345_230 Hb_000345_230 Hb_009252_080--Hb_000345_230 Hb_001709_090--Hb_000375_260 Hb_001709_090--Hb_001056_040 Hb_001709_090--Hb_000345_230 Hb_002028_270 Hb_002028_270 Hb_001709_090--Hb_002028_270 Hb_001159_090 Hb_001159_090 Hb_000375_260--Hb_001159_090 Hb_006120_130 Hb_006120_130 Hb_000375_260--Hb_006120_130 Hb_000375_260--Hb_002028_270 Hb_000375_260--Hb_003992_020 Hb_003935_040 Hb_003935_040 Hb_000162_190--Hb_003935_040 Hb_000162_190--Hb_025787_020 Hb_001141_440 Hb_001141_440 Hb_000162_190--Hb_001141_440 Hb_000310_110 Hb_000310_110 Hb_000162_190--Hb_000310_110 Hb_039075_010 Hb_039075_010 Hb_000310_040--Hb_039075_010 Hb_000333_140 Hb_000333_140 Hb_000310_040--Hb_000333_140 Hb_005211_170 Hb_005211_170 Hb_000310_040--Hb_005211_170 Hb_030360_010 Hb_030360_010 Hb_000310_040--Hb_030360_010 Hb_004732_070 Hb_004732_070 Hb_000310_040--Hb_004732_070 Hb_000861_060 Hb_000861_060 Hb_000310_040--Hb_000861_060 Hb_000329_720 Hb_000329_720 Hb_003992_020--Hb_000329_720 Hb_003992_020--Hb_003935_040 Hb_000005_360 Hb_000005_360 Hb_003992_020--Hb_000005_360 Hb_003992_020--Hb_009252_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.173414 2.22781 10.0504 17.8476 0.0106939 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.8936 2.13535

CAGE analysis