Hb_000395_310

Information

Type -
Description -
Location Contig395: 345456-348991
Sequence    

Annotation

kegg
ID rcu:RCOM_0800450
description Receptor protein kinase CLAVATA1 precursor, putative (EC:1.3.1.74)
nr
ID XP_002516515.1
description Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
swissprot
ID O82318
description Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=2 SV=1
trembl
ID B9RRZ6
description Receptor protein kinase CLAVATA1, putative OS=Ricinus communis GN=RCOM_0800450 PE=4 SV=1
Gene Ontology
ID GO:0005783
description probably inactive leucine-rich repeat receptor-like protein kinase at2g25790

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39535: 345247-349543
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000395_310 0.0 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
2 Hb_002388_070 0.0444048046 - - ring finger protein, putative [Ricinus communis]
3 Hb_002874_200 0.0660202135 - - PREDICTED: uncharacterized protein LOC105109832 [Populus euphratica]
4 Hb_004032_290 0.071243581 - - protein binding protein, putative [Ricinus communis]
5 Hb_000230_410 0.0828423679 - - PREDICTED: uncharacterized protein LOC105631891 [Jatropha curcas]
6 Hb_003466_010 0.0853425605 - - PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Jatropha curcas]
7 Hb_010142_060 0.0862673154 - - Blue copper protein precursor, putative [Ricinus communis]
8 Hb_009783_010 0.0873470417 - - PREDICTED: sulfated surface glycoprotein 185-like [Populus euphratica]
9 Hb_004020_030 0.088266612 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
10 Hb_000093_010 0.0883125036 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
11 Hb_000676_230 0.0888115984 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
12 Hb_012132_050 0.0895994231 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
13 Hb_004531_160 0.0928781277 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
14 Hb_001898_040 0.0954402809 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
15 Hb_002997_150 0.0965728817 - - hypothetical protein RCOM_1406750 [Ricinus communis]
16 Hb_000866_130 0.0979063534 - - hypothetical protein JCGZ_14397 [Jatropha curcas]
17 Hb_005648_020 0.1009973927 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]
18 Hb_036520_030 0.1021943989 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
19 Hb_003376_140 0.1022362808 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.1 [Jatropha curcas]
20 Hb_009785_030 0.1040489595 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]

Gene co-expression network

sample Hb_000395_310 Hb_000395_310 Hb_002388_070 Hb_002388_070 Hb_000395_310--Hb_002388_070 Hb_002874_200 Hb_002874_200 Hb_000395_310--Hb_002874_200 Hb_004032_290 Hb_004032_290 Hb_000395_310--Hb_004032_290 Hb_000230_410 Hb_000230_410 Hb_000395_310--Hb_000230_410 Hb_003466_010 Hb_003466_010 Hb_000395_310--Hb_003466_010 Hb_010142_060 Hb_010142_060 Hb_000395_310--Hb_010142_060 Hb_002388_070--Hb_002874_200 Hb_002997_150 Hb_002997_150 Hb_002388_070--Hb_002997_150 Hb_002388_070--Hb_004032_290 Hb_004020_030 Hb_004020_030 Hb_002388_070--Hb_004020_030 Hb_002388_070--Hb_000230_410 Hb_002874_200--Hb_000230_410 Hb_002874_200--Hb_004032_290 Hb_007185_050 Hb_007185_050 Hb_002874_200--Hb_007185_050 Hb_001136_040 Hb_001136_040 Hb_002874_200--Hb_001136_040 Hb_036520_030 Hb_036520_030 Hb_004032_290--Hb_036520_030 Hb_004032_290--Hb_007185_050 Hb_000676_230 Hb_000676_230 Hb_004032_290--Hb_000676_230 Hb_004032_290--Hb_000230_410 Hb_000009_280 Hb_000009_280 Hb_000230_410--Hb_000009_280 Hb_009783_010 Hb_009783_010 Hb_000230_410--Hb_009783_010 Hb_000230_410--Hb_007185_050 Hb_000230_410--Hb_001136_040 Hb_005648_020 Hb_005648_020 Hb_003466_010--Hb_005648_020 Hb_000093_010 Hb_000093_010 Hb_003466_010--Hb_000093_010 Hb_000866_130 Hb_000866_130 Hb_003466_010--Hb_000866_130 Hb_003466_010--Hb_036520_030 Hb_012132_050 Hb_012132_050 Hb_003466_010--Hb_012132_050 Hb_008021_050 Hb_008021_050 Hb_003466_010--Hb_008021_050 Hb_001534_140 Hb_001534_140 Hb_010142_060--Hb_001534_140 Hb_004531_160 Hb_004531_160 Hb_010142_060--Hb_004531_160 Hb_010142_060--Hb_000676_230 Hb_000368_050 Hb_000368_050 Hb_010142_060--Hb_000368_050 Hb_010142_060--Hb_004032_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0576779 1.01655 2.41697 9.41113 0.0380361 0.0781284
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.473409 3.37602

CAGE analysis