Hb_005144_150

Information

Type -
Description -
Location Contig5144: 109243-109920
Sequence    

Annotation

kegg
ID mdm:103430307
description uncharacterized LOC103430307
nr
ID CAN61265.1
description hypothetical protein VITISV_013572 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5BE42
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013572 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005144_150 0.0 - - hypothetical protein VITISV_013572 [Vitis vinifera]
2 Hb_001257_140 0.063233113 - - Gb:AAF02129.1, putative [Theobroma cacao]
3 Hb_003858_070 0.0661413718 - - PREDICTED: uncharacterized protein LOC105647879 [Jatropha curcas]
4 Hb_001006_300 0.0800326802 - - lipid binding protein, putative [Ricinus communis]
5 Hb_017061_010 0.0829942016 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 5-like [Jatropha curcas]
6 Hb_003849_170 0.0837472858 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
7 Hb_001898_030 0.0875346331 - - protein kinase-coding resistance protein [Nicotiana repanda]
8 Hb_000813_020 0.0966814479 - - PREDICTED: metacaspase-3-like [Jatropha curcas]
9 Hb_002014_130 0.0993173646 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000352_360 0.1009600883 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
11 Hb_000163_170 0.1011123173 - - -
12 Hb_010863_020 0.1016820959 - - PREDICTED: BTB/POZ domain-containing protein At1g03010-like isoform X1 [Jatropha curcas]
13 Hb_002304_110 0.1020278433 - - hypothetical protein MIMGU_mgv1a023246mg [Erythranthe guttata]
14 Hb_170077_020 0.1023988213 - - PREDICTED: probable serine incorporator [Jatropha curcas]
15 Hb_000086_530 0.1066182656 - - conserved hypothetical protein [Ricinus communis]
16 Hb_013399_060 0.1099004079 - - PREDICTED: uncharacterized protein LOC105133408 [Populus euphratica]
17 Hb_000334_090 0.1149020195 - - hypothetical protein JCGZ_16789 [Jatropha curcas]
18 Hb_003680_240 0.1150938286 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
19 Hb_000139_460 0.1160508269 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
20 Hb_019299_020 0.1169169991 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]

Gene co-expression network

sample Hb_005144_150 Hb_005144_150 Hb_001257_140 Hb_001257_140 Hb_005144_150--Hb_001257_140 Hb_003858_070 Hb_003858_070 Hb_005144_150--Hb_003858_070 Hb_001006_300 Hb_001006_300 Hb_005144_150--Hb_001006_300 Hb_017061_010 Hb_017061_010 Hb_005144_150--Hb_017061_010 Hb_003849_170 Hb_003849_170 Hb_005144_150--Hb_003849_170 Hb_001898_030 Hb_001898_030 Hb_005144_150--Hb_001898_030 Hb_001257_140--Hb_003849_170 Hb_000352_360 Hb_000352_360 Hb_001257_140--Hb_000352_360 Hb_010863_020 Hb_010863_020 Hb_001257_140--Hb_010863_020 Hb_170077_020 Hb_170077_020 Hb_001257_140--Hb_170077_020 Hb_001257_140--Hb_003858_070 Hb_003858_070--Hb_001006_300 Hb_003858_070--Hb_017061_010 Hb_013399_060 Hb_013399_060 Hb_003858_070--Hb_013399_060 Hb_180088_010 Hb_180088_010 Hb_003858_070--Hb_180088_010 Hb_003858_070--Hb_010863_020 Hb_001006_300--Hb_017061_010 Hb_001006_300--Hb_001898_030 Hb_001006_300--Hb_013399_060 Hb_000964_120 Hb_000964_120 Hb_001006_300--Hb_000964_120 Hb_017061_010--Hb_001898_030 Hb_017061_010--Hb_000964_120 Hb_000497_080 Hb_000497_080 Hb_017061_010--Hb_000497_080 Hb_003849_170--Hb_170077_020 Hb_005648_020 Hb_005648_020 Hb_003849_170--Hb_005648_020 Hb_002616_020 Hb_002616_020 Hb_003849_170--Hb_002616_020 Hb_003849_170--Hb_000352_360 Hb_002304_110 Hb_002304_110 Hb_001898_030--Hb_002304_110 Hb_090210_010 Hb_090210_010 Hb_001898_030--Hb_090210_010 Hb_002326_090 Hb_002326_090 Hb_001898_030--Hb_002326_090 Hb_007292_060 Hb_007292_060 Hb_001898_030--Hb_007292_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0372105 0.145414 1.16334 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0812985 0.131006

CAGE analysis