Hb_180088_010

Information

Type -
Description -
Location Contig180088: 3-332
Sequence    

Annotation

kegg
ID rcu:RCOM_1446200
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74 2.7.11.23)
nr
ID XP_002512884.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RH25
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1446200 PE=3 SV=1
Gene Ontology
ID GO:0016301
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_180088_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_006351_050 0.0420521352 - - PREDICTED: uncharacterized protein LOC105133646 [Populus euphratica]
3 Hb_001500_020 0.0500472881 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_007919_010 0.0601499067 - - conserved hypothetical protein [Ricinus communis]
5 Hb_112950_010 0.0703942705 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
6 Hb_009421_060 0.0724926081 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
7 Hb_003598_050 0.0755564466 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
8 Hb_003858_070 0.0796608474 - - PREDICTED: uncharacterized protein LOC105647879 [Jatropha curcas]
9 Hb_001579_160 0.080121085 - - PREDICTED: kininogen-1-like [Jatropha curcas]
10 Hb_000497_080 0.0838885334 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000172_450 0.0852580209 - - Uncharacterized protein TCM_001203 [Theobroma cacao]
12 Hb_013399_060 0.0867978354 - - PREDICTED: uncharacterized protein LOC105133408 [Populus euphratica]
13 Hb_002260_140 0.0887420809 - - conserved hypothetical protein [Ricinus communis]
14 Hb_135757_030 0.0895908819 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
15 Hb_021596_050 0.0906070637 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000083_200 0.0982963418 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001541_170 0.0989185223 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
18 Hb_000959_170 0.0993577591 - - Cell division protein kinase 7, putative [Ricinus communis]
19 Hb_000614_120 0.1029639099 - - hypothetical protein JCGZ_17923 [Jatropha curcas]
20 Hb_092272_010 0.1036443966 - - -

Gene co-expression network

sample Hb_180088_010 Hb_180088_010 Hb_006351_050 Hb_006351_050 Hb_180088_010--Hb_006351_050 Hb_001500_020 Hb_001500_020 Hb_180088_010--Hb_001500_020 Hb_007919_010 Hb_007919_010 Hb_180088_010--Hb_007919_010 Hb_112950_010 Hb_112950_010 Hb_180088_010--Hb_112950_010 Hb_009421_060 Hb_009421_060 Hb_180088_010--Hb_009421_060 Hb_003598_050 Hb_003598_050 Hb_180088_010--Hb_003598_050 Hb_006351_050--Hb_001500_020 Hb_006351_050--Hb_003598_050 Hb_000497_080 Hb_000497_080 Hb_006351_050--Hb_000497_080 Hb_006351_050--Hb_112950_010 Hb_006351_050--Hb_007919_010 Hb_001500_020--Hb_003598_050 Hb_001500_020--Hb_112950_010 Hb_135757_030 Hb_135757_030 Hb_001500_020--Hb_135757_030 Hb_000172_450 Hb_000172_450 Hb_001500_020--Hb_000172_450 Hb_000098_230 Hb_000098_230 Hb_007919_010--Hb_000098_230 Hb_000422_060 Hb_000422_060 Hb_007919_010--Hb_000422_060 Hb_007919_010--Hb_001500_020 Hb_001579_160 Hb_001579_160 Hb_007919_010--Hb_001579_160 Hb_112950_010--Hb_003598_050 Hb_000083_200 Hb_000083_200 Hb_112950_010--Hb_000083_200 Hb_002686_220 Hb_002686_220 Hb_112950_010--Hb_002686_220 Hb_001349_040 Hb_001349_040 Hb_112950_010--Hb_001349_040 Hb_009421_060--Hb_001579_160 Hb_009421_060--Hb_000083_200 Hb_021596_050 Hb_021596_050 Hb_009421_060--Hb_021596_050 Hb_009421_060--Hb_001500_020 Hb_001541_170 Hb_001541_170 Hb_009421_060--Hb_001541_170 Hb_003598_050--Hb_000497_080 Hb_003598_050--Hb_002686_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.92164 6.17617 49.7078 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.954734 6.46842

CAGE analysis