Hb_001500_020

Information

Type -
Description -
Location Contig1500: 17407-19982
Sequence    

Annotation

kegg
ID rcu:RCOM_1437630
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_002512635.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q94AG2
description Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2
trembl
ID B9RFW6
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1437630 PE=4 SV=1
Gene Ontology
ID GO:0016301
description somatic embryogenesis receptor kinase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12520: 17440-19982
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001500_020 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_006351_050 0.0311812184 - - PREDICTED: uncharacterized protein LOC105133646 [Populus euphratica]
3 Hb_180088_010 0.0500472881 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_003598_050 0.0616798443 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
5 Hb_112950_010 0.0674956962 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
6 Hb_135757_030 0.0682804961 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
7 Hb_000172_450 0.0700168439 - - Uncharacterized protein TCM_001203 [Theobroma cacao]
8 Hb_009421_060 0.0754253918 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
9 Hb_009079_020 0.0765276069 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
10 Hb_002260_140 0.0765439438 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007919_010 0.0803431694 - - conserved hypothetical protein [Ricinus communis]
12 Hb_021596_050 0.0830822175 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000497_080 0.0880657538 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001541_170 0.0935157207 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
15 Hb_000098_230 0.0935504983 - - Potassium channel AKT2/3, putative [Ricinus communis]
16 Hb_013399_060 0.0939011171 - - PREDICTED: uncharacterized protein LOC105133408 [Populus euphratica]
17 Hb_001579_160 0.0940180103 - - PREDICTED: kininogen-1-like [Jatropha curcas]
18 Hb_003175_120 0.0951662102 - - PREDICTED: uncharacterized protein LOC105141472 isoform X1 [Populus euphratica]
19 Hb_000175_370 0.0954630142 - - hypothetical protein EUGRSUZ_F03862 [Eucalyptus grandis]
20 Hb_000083_200 0.0955562869 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001500_020 Hb_001500_020 Hb_006351_050 Hb_006351_050 Hb_001500_020--Hb_006351_050 Hb_180088_010 Hb_180088_010 Hb_001500_020--Hb_180088_010 Hb_003598_050 Hb_003598_050 Hb_001500_020--Hb_003598_050 Hb_112950_010 Hb_112950_010 Hb_001500_020--Hb_112950_010 Hb_135757_030 Hb_135757_030 Hb_001500_020--Hb_135757_030 Hb_000172_450 Hb_000172_450 Hb_001500_020--Hb_000172_450 Hb_006351_050--Hb_180088_010 Hb_006351_050--Hb_003598_050 Hb_000497_080 Hb_000497_080 Hb_006351_050--Hb_000497_080 Hb_006351_050--Hb_112950_010 Hb_007919_010 Hb_007919_010 Hb_006351_050--Hb_007919_010 Hb_180088_010--Hb_007919_010 Hb_180088_010--Hb_112950_010 Hb_009421_060 Hb_009421_060 Hb_180088_010--Hb_009421_060 Hb_180088_010--Hb_003598_050 Hb_003598_050--Hb_112950_010 Hb_003598_050--Hb_000497_080 Hb_002686_220 Hb_002686_220 Hb_003598_050--Hb_002686_220 Hb_000083_200 Hb_000083_200 Hb_112950_010--Hb_000083_200 Hb_112950_010--Hb_002686_220 Hb_001349_040 Hb_001349_040 Hb_112950_010--Hb_001349_040 Hb_002260_140 Hb_002260_140 Hb_135757_030--Hb_002260_140 Hb_001818_010 Hb_001818_010 Hb_135757_030--Hb_001818_010 Hb_003175_120 Hb_003175_120 Hb_135757_030--Hb_003175_120 Hb_135757_030--Hb_003598_050 Hb_135757_030--Hb_006351_050 Hb_000172_450--Hb_002260_140 Hb_000172_450--Hb_006351_050 Hb_000172_450--Hb_180088_010 Hb_000172_450--Hb_135757_030 Hb_000172_450--Hb_112950_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.217792 8.33734 11.2661 81.7265 0.122475 0.0431399
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.91455 11.4847

CAGE analysis