Hb_001541_170

Information

Type -
Description -
Location Contig1541: 149267-149521
Sequence    

Annotation

kegg
ID pop:POPTR_0008s18990g
description POPTRDRAFT_565154; hypothetical protein
nr
ID KDP26692.1
description hypothetical protein JCGZ_17850 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JS28
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17850 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001541_170 0.0 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
2 Hb_001579_160 0.0601564978 - - PREDICTED: kininogen-1-like [Jatropha curcas]
3 Hb_000098_230 0.066536743 - - Potassium channel AKT2/3, putative [Ricinus communis]
4 Hb_005588_050 0.0753807623 - - conserved hypothetical protein [Ricinus communis]
5 Hb_009421_060 0.0798272463 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
6 Hb_007919_010 0.0827438758 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004158_040 0.0827529345 - - PREDICTED: WAT1-related protein At2g37460-like [Jatropha curcas]
8 Hb_012217_010 0.083772944 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
9 Hb_000847_110 0.0851119783 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006618_100 0.0851324684 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
11 Hb_007441_100 0.0930429413 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 12 [Populus euphratica]
12 Hb_002186_170 0.0934660061 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
13 Hb_001500_020 0.0935157207 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_000087_190 0.0935594915 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
15 Hb_000172_450 0.0960313006 - - Uncharacterized protein TCM_001203 [Theobroma cacao]
16 Hb_003582_030 0.0963055912 - - PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
17 Hb_000422_060 0.0969315658 transcription factor TF Family: OFP hypothetical protein RCOM_1282480 [Ricinus communis]
18 Hb_180088_010 0.0989185223 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_011344_050 0.0993556784 - - PREDICTED: 21 kDa protein [Jatropha curcas]
20 Hb_004757_010 0.1013019739 - - PREDICTED: uncharacterized protein LOC105121200 [Populus euphratica]

Gene co-expression network

sample Hb_001541_170 Hb_001541_170 Hb_001579_160 Hb_001579_160 Hb_001541_170--Hb_001579_160 Hb_000098_230 Hb_000098_230 Hb_001541_170--Hb_000098_230 Hb_005588_050 Hb_005588_050 Hb_001541_170--Hb_005588_050 Hb_009421_060 Hb_009421_060 Hb_001541_170--Hb_009421_060 Hb_007919_010 Hb_007919_010 Hb_001541_170--Hb_007919_010 Hb_004158_040 Hb_004158_040 Hb_001541_170--Hb_004158_040 Hb_001579_160--Hb_009421_060 Hb_001579_160--Hb_004158_040 Hb_001454_350 Hb_001454_350 Hb_001579_160--Hb_001454_350 Hb_001722_110 Hb_001722_110 Hb_001579_160--Hb_001722_110 Hb_180088_010 Hb_180088_010 Hb_001579_160--Hb_180088_010 Hb_003582_030 Hb_003582_030 Hb_000098_230--Hb_003582_030 Hb_000098_230--Hb_007919_010 Hb_001418_050 Hb_001418_050 Hb_000098_230--Hb_001418_050 Hb_000422_060 Hb_000422_060 Hb_000098_230--Hb_000422_060 Hb_007441_100 Hb_007441_100 Hb_000098_230--Hb_007441_100 Hb_005588_050--Hb_004158_040 Hb_005588_050--Hb_001722_110 Hb_005588_050--Hb_001579_160 Hb_012787_020 Hb_012787_020 Hb_005588_050--Hb_012787_020 Hb_000580_210 Hb_000580_210 Hb_005588_050--Hb_000580_210 Hb_000083_200 Hb_000083_200 Hb_009421_060--Hb_000083_200 Hb_021596_050 Hb_021596_050 Hb_009421_060--Hb_021596_050 Hb_009421_060--Hb_180088_010 Hb_001500_020 Hb_001500_020 Hb_009421_060--Hb_001500_020 Hb_007919_010--Hb_180088_010 Hb_006351_050 Hb_006351_050 Hb_007919_010--Hb_006351_050 Hb_007919_010--Hb_000422_060 Hb_007919_010--Hb_001500_020 Hb_007919_010--Hb_001579_160 Hb_004158_040--Hb_001722_110 Hb_004158_040--Hb_001454_350 Hb_010217_020 Hb_010217_020 Hb_004158_040--Hb_010217_020 Hb_006618_100 Hb_006618_100 Hb_004158_040--Hb_006618_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.384727 120.626 68.1819 815.033 2.85865 4.96611
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.588564 0 0 12.2453 140.043

CAGE analysis