Hb_001454_350

Information

Type -
Description -
Location Contig1454: 268865-270133
Sequence    

Annotation

kegg
ID pop:POPTR_0010s01580g
description POPTRDRAFT_229247; hypothetical protein
nr
ID XP_012083965.1
description PREDICTED: uncharacterized protein LOC105643449 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K6D1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18895 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001454_350 0.0 - - PREDICTED: uncharacterized protein LOC105643449 [Jatropha curcas]
2 Hb_004158_040 0.0696333338 - - PREDICTED: WAT1-related protein At2g37460-like [Jatropha curcas]
3 Hb_001579_160 0.0758816593 - - PREDICTED: kininogen-1-like [Jatropha curcas]
4 Hb_001722_110 0.0789634175 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
5 Hb_000188_040 0.0830510058 - - PREDICTED: uncharacterized protein LOC105629522 [Jatropha curcas]
6 Hb_010217_020 0.0870436181 - - cinnamate 4-hydroxylase [Leucaena leucocephala]
7 Hb_009421_060 0.0921592133 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
8 Hb_006618_100 0.0935177972 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
9 Hb_000291_240 0.0941800641 - - hypothetical protein POPTR_0005s16430g [Populus trichocarpa]
10 Hb_145975_010 0.1031721621 - - cytochrome P450, putative [Ricinus communis]
11 Hb_006252_070 0.1056132948 - - hypothetical protein JCGZ_17254 [Jatropha curcas]
12 Hb_005588_050 0.1070616774 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000991_060 0.1078527458 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
14 Hb_027411_030 0.1095025039 - - metal ion binding protein, putative [Ricinus communis]
15 Hb_004757_010 0.1095544018 - - PREDICTED: uncharacterized protein LOC105121200 [Populus euphratica]
16 Hb_003638_020 0.110695333 - - PREDICTED: uncharacterized protein LOC105645807 [Jatropha curcas]
17 Hb_000046_390 0.1113283463 - - PREDICTED: CASP-like protein 1D1 [Jatropha curcas]
18 Hb_004625_020 0.1140685665 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
19 Hb_008731_010 0.1154384357 - - hypothetical protein POPTR_0605s00010g [Populus trichocarpa]
20 Hb_001541_170 0.1160907338 - - hypothetical protein JCGZ_17850 [Jatropha curcas]

Gene co-expression network

sample Hb_001454_350 Hb_001454_350 Hb_004158_040 Hb_004158_040 Hb_001454_350--Hb_004158_040 Hb_001579_160 Hb_001579_160 Hb_001454_350--Hb_001579_160 Hb_001722_110 Hb_001722_110 Hb_001454_350--Hb_001722_110 Hb_000188_040 Hb_000188_040 Hb_001454_350--Hb_000188_040 Hb_010217_020 Hb_010217_020 Hb_001454_350--Hb_010217_020 Hb_009421_060 Hb_009421_060 Hb_001454_350--Hb_009421_060 Hb_004158_040--Hb_001579_160 Hb_004158_040--Hb_001722_110 Hb_005588_050 Hb_005588_050 Hb_004158_040--Hb_005588_050 Hb_004158_040--Hb_010217_020 Hb_006618_100 Hb_006618_100 Hb_004158_040--Hb_006618_100 Hb_001579_160--Hb_009421_060 Hb_001541_170 Hb_001541_170 Hb_001579_160--Hb_001541_170 Hb_001579_160--Hb_001722_110 Hb_180088_010 Hb_180088_010 Hb_001579_160--Hb_180088_010 Hb_003638_020 Hb_003638_020 Hb_001722_110--Hb_003638_020 Hb_001722_110--Hb_005588_050 Hb_000339_060 Hb_000339_060 Hb_001722_110--Hb_000339_060 Hb_002031_020 Hb_002031_020 Hb_000188_040--Hb_002031_020 Hb_180518_010 Hb_180518_010 Hb_000188_040--Hb_180518_010 Hb_005291_020 Hb_005291_020 Hb_000188_040--Hb_005291_020 Hb_000462_120 Hb_000462_120 Hb_000188_040--Hb_000462_120 Hb_006252_070 Hb_006252_070 Hb_000188_040--Hb_006252_070 Hb_010217_020--Hb_006618_100 Hb_000953_110 Hb_000953_110 Hb_010217_020--Hb_000953_110 Hb_000349_280 Hb_000349_280 Hb_010217_020--Hb_000349_280 Hb_007545_220 Hb_007545_220 Hb_010217_020--Hb_007545_220 Hb_000083_200 Hb_000083_200 Hb_009421_060--Hb_000083_200 Hb_021596_050 Hb_021596_050 Hb_009421_060--Hb_021596_050 Hb_009421_060--Hb_180088_010 Hb_001500_020 Hb_001500_020 Hb_009421_060--Hb_001500_020 Hb_009421_060--Hb_001541_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.9704 0.878741 20.6259 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.716984 4.46283

CAGE analysis