Hb_007545_220

Information

Type -
Description -
Location Contig7545: 151307-152489
Sequence    

Annotation

kegg
ID pop:POPTR_0013s06280g
description hypothetical protein
nr
ID XP_012070364.1
description PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067DCK9
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034425mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57001: 151283-152441 , PASA_asmbl_57002: 151408-152590
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007545_220 0.0 - - PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]
2 Hb_000953_110 0.0526341588 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
3 Hb_000197_260 0.0854939388 - - hypothetical protein PRUPE_ppa025448mg [Prunus persica]
4 Hb_000599_160 0.0943809364 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 21/22 [Jatropha curcas]
5 Hb_005588_050 0.0953756616 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004158_040 0.0955288231 - - PREDICTED: WAT1-related protein At2g37460-like [Jatropha curcas]
7 Hb_010217_020 0.0956442671 - - cinnamate 4-hydroxylase [Leucaena leucocephala]
8 Hb_001680_050 0.0969904777 - - -
9 Hb_000853_140 0.0996408896 - - hypothetical protein POPTR_0014s12080g [Populus trichocarpa]
10 Hb_180980_010 0.1011148986 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Malus domestica]
11 Hb_005183_070 0.1018399497 - - PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]
12 Hb_061783_010 0.1042224026 - - PREDICTED: uncharacterized protein LOC105124983 isoform X4 [Populus euphratica]
13 Hb_004450_090 0.1047732987 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
14 Hb_001541_170 0.1059420754 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
15 Hb_003582_030 0.1082519297 - - PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
16 Hb_000317_170 0.1090565542 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
17 Hb_029665_010 0.1116295968 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
18 Hb_007579_030 0.1116562724 - - receptor protein kinase, putative [Ricinus communis]
19 Hb_002186_110 0.1119577627 - - hypothetical protein CICLE_v10024045mg, partial [Citrus clementina]
20 Hb_002186_170 0.1145893359 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]

Gene co-expression network

sample Hb_007545_220 Hb_007545_220 Hb_000953_110 Hb_000953_110 Hb_007545_220--Hb_000953_110 Hb_000197_260 Hb_000197_260 Hb_007545_220--Hb_000197_260 Hb_000599_160 Hb_000599_160 Hb_007545_220--Hb_000599_160 Hb_005588_050 Hb_005588_050 Hb_007545_220--Hb_005588_050 Hb_004158_040 Hb_004158_040 Hb_007545_220--Hb_004158_040 Hb_010217_020 Hb_010217_020 Hb_007545_220--Hb_010217_020 Hb_000953_110--Hb_010217_020 Hb_000853_140 Hb_000853_140 Hb_000953_110--Hb_000853_140 Hb_000953_110--Hb_000197_260 Hb_000953_110--Hb_004158_040 Hb_005183_070 Hb_005183_070 Hb_000953_110--Hb_005183_070 Hb_000197_260--Hb_005183_070 Hb_152914_010 Hb_152914_010 Hb_000197_260--Hb_152914_010 Hb_029665_010 Hb_029665_010 Hb_000197_260--Hb_029665_010 Hb_001680_050 Hb_001680_050 Hb_000197_260--Hb_001680_050 Hb_002186_110 Hb_002186_110 Hb_000197_260--Hb_002186_110 Hb_007579_030 Hb_007579_030 Hb_000197_260--Hb_007579_030 Hb_000317_170 Hb_000317_170 Hb_000599_160--Hb_000317_170 Hb_000307_060 Hb_000307_060 Hb_000599_160--Hb_000307_060 Hb_180980_010 Hb_180980_010 Hb_000599_160--Hb_180980_010 Hb_000864_050 Hb_000864_050 Hb_000599_160--Hb_000864_050 Hb_029791_010 Hb_029791_010 Hb_000599_160--Hb_029791_010 Hb_005588_050--Hb_004158_040 Hb_001541_170 Hb_001541_170 Hb_005588_050--Hb_001541_170 Hb_001722_110 Hb_001722_110 Hb_005588_050--Hb_001722_110 Hb_001579_160 Hb_001579_160 Hb_005588_050--Hb_001579_160 Hb_012787_020 Hb_012787_020 Hb_005588_050--Hb_012787_020 Hb_000580_210 Hb_000580_210 Hb_005588_050--Hb_000580_210 Hb_004158_040--Hb_001579_160 Hb_004158_040--Hb_001722_110 Hb_001454_350 Hb_001454_350 Hb_004158_040--Hb_001454_350 Hb_004158_040--Hb_010217_020 Hb_006618_100 Hb_006618_100 Hb_004158_040--Hb_006618_100 Hb_010217_020--Hb_006618_100 Hb_010217_020--Hb_001454_350 Hb_000349_280 Hb_000349_280 Hb_010217_020--Hb_000349_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 11.577 3.23048 50.5372 0 0.0464606
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0815536 0 0 0.313104 13.1777

CAGE analysis