Hb_000307_060

Information

Type -
Description -
Location Contig307: 72834-75713
Sequence    

Annotation

kegg
ID tcc:TCM_034315
description Mechanosensitive ion channel domain-containing protein, putative
nr
ID XP_012073880.1
description PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
swissprot
ID F4IME2
description Mechanosensitive ion channel protein 8 OS=Arabidopsis thaliana GN=MSL8 PE=2 SV=2
trembl
ID A0A067KPD4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08154 PE=4 SV=1
Gene Ontology
ID GO:0016020
description mechanosensitive ion channel protein 8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32407: 72849-73415 , PASA_asmbl_32408: 73475-74122 , PASA_asmbl_32409: 74249-74681 , PASA_asmbl_32410: 74798-75736
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000307_060 0.0 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
2 Hb_000030_230 0.0726259447 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
3 Hb_000317_170 0.0763565207 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
4 Hb_000599_160 0.0868864765 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 21/22 [Jatropha curcas]
5 Hb_000928_200 0.1066842498 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
6 Hb_005183_070 0.1091344273 - - PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]
7 Hb_000000_260 0.1103687897 - - PREDICTED: probable galacturonosyltransferase-like 1 [Jatropha curcas]
8 Hb_000197_260 0.1109676237 - - hypothetical protein PRUPE_ppa025448mg [Prunus persica]
9 Hb_000087_190 0.1119955489 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
10 Hb_001541_170 0.1185309789 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
11 Hb_003582_030 0.1194033992 - - PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
12 Hb_007545_220 0.119585144 - - PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]
13 Hb_001680_050 0.1196282364 - - -
14 Hb_029791_010 0.1208164927 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
15 Hb_005588_050 0.120963051 - - conserved hypothetical protein [Ricinus communis]
16 Hb_021596_050 0.125981795 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000856_030 0.1274791276 - - ATP binding protein, putative [Ricinus communis]
18 Hb_002186_110 0.1281314498 - - hypothetical protein CICLE_v10024045mg, partial [Citrus clementina]
19 Hb_012787_020 0.1290523337 - - PREDICTED: thioredoxin H7-like [Jatropha curcas]
20 Hb_180980_010 0.1291991647 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Malus domestica]

Gene co-expression network

sample Hb_000307_060 Hb_000307_060 Hb_000030_230 Hb_000030_230 Hb_000307_060--Hb_000030_230 Hb_000317_170 Hb_000317_170 Hb_000307_060--Hb_000317_170 Hb_000599_160 Hb_000599_160 Hb_000307_060--Hb_000599_160 Hb_000928_200 Hb_000928_200 Hb_000307_060--Hb_000928_200 Hb_005183_070 Hb_005183_070 Hb_000307_060--Hb_005183_070 Hb_000000_260 Hb_000000_260 Hb_000307_060--Hb_000000_260 Hb_003582_030 Hb_003582_030 Hb_000030_230--Hb_003582_030 Hb_000030_230--Hb_000317_170 Hb_000087_190 Hb_000087_190 Hb_000030_230--Hb_000087_190 Hb_000030_230--Hb_000000_260 Hb_002186_110 Hb_002186_110 Hb_000030_230--Hb_002186_110 Hb_000317_170--Hb_000000_260 Hb_001680_050 Hb_001680_050 Hb_000317_170--Hb_001680_050 Hb_000856_030 Hb_000856_030 Hb_000317_170--Hb_000856_030 Hb_029791_010 Hb_029791_010 Hb_000317_170--Hb_029791_010 Hb_000317_170--Hb_000599_160 Hb_180980_010 Hb_180980_010 Hb_000599_160--Hb_180980_010 Hb_000864_050 Hb_000864_050 Hb_000599_160--Hb_000864_050 Hb_007545_220 Hb_007545_220 Hb_000599_160--Hb_007545_220 Hb_000599_160--Hb_029791_010 Hb_000457_120 Hb_000457_120 Hb_000928_200--Hb_000457_120 Hb_000928_200--Hb_000317_170 Hb_005305_040 Hb_005305_040 Hb_000928_200--Hb_005305_040 Hb_000928_200--Hb_000856_030 Hb_000928_200--Hb_000030_230 Hb_000197_260 Hb_000197_260 Hb_005183_070--Hb_000197_260 Hb_000368_040 Hb_000368_040 Hb_005183_070--Hb_000368_040 Hb_005588_050 Hb_005588_050 Hb_005183_070--Hb_005588_050 Hb_029665_010 Hb_029665_010 Hb_005183_070--Hb_029665_010 Hb_005183_070--Hb_000317_170 Hb_005183_070--Hb_001680_050 Hb_000000_260--Hb_029791_010 Hb_000000_260--Hb_001680_050 Hb_007579_030 Hb_007579_030 Hb_000000_260--Hb_007579_030 Hb_000983_130 Hb_000983_130 Hb_000000_260--Hb_000983_130 Hb_152914_010 Hb_152914_010 Hb_000000_260--Hb_152914_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0411352 4.99859 2.30413 25.4093 0.104943 0.156795
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.39211 0.40672 0.0267321 0.506836 6.82555

CAGE analysis