Hb_012787_020

Information

Type -
Description -
Location Contig12787: 7969-10268
Sequence    

Annotation

kegg
ID rcu:RCOM_0698920
description Thioredoxin H-type, putative
nr
ID XP_012091966.1
description PREDICTED: thioredoxin H7-like [Jatropha curcas]
swissprot
ID Q9XIF4
description Thioredoxin H7 OS=Arabidopsis thaliana GN=TRX7 PE=2 SV=1
trembl
ID A0A067JP10
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21715 PE=4 SV=1
Gene Ontology
ID GO:0005623
description thioredoxin h7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012787_020 0.0 - - PREDICTED: thioredoxin H7-like [Jatropha curcas]
2 Hb_005588_050 0.0926842596 - - conserved hypothetical protein [Ricinus communis]
3 Hb_071079_040 0.0930542056 - - PREDICTED: bidirectional sugar transporter SWEET3 [Jatropha curcas]
4 Hb_000645_080 0.100770903 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
5 Hb_028514_010 0.1078429016 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
6 Hb_001541_170 0.1099099855 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
7 Hb_115572_010 0.1099849794 - - PREDICTED: beta-galactosidase 6 [Jatropha curcas]
8 Hb_001722_110 0.1113172302 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
9 Hb_009421_060 0.1155619372 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
10 Hb_021596_050 0.1191795319 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000449_070 0.1193673304 - - unnamed protein product [Vitis vinifera]
12 Hb_004586_440 0.1195523668 - - Blue copper protein precursor, putative [Ricinus communis]
13 Hb_000083_200 0.1196932904 - - conserved hypothetical protein [Ricinus communis]
14 Hb_011381_050 0.120085964 - - PREDICTED: protein GLUTAMINE DUMPER 5-like [Jatropha curcas]
15 Hb_017914_020 0.120119108 - - -
16 Hb_001349_040 0.1202281546 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Populus euphratica]
17 Hb_009117_020 0.1227564696 - - RALF-LIKE 32 family protein [Populus trichocarpa]
18 Hb_000172_450 0.1232127994 - - Uncharacterized protein TCM_001203 [Theobroma cacao]
19 Hb_005183_070 0.1236962255 - - PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]
20 Hb_000599_160 0.124088635 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 21/22 [Jatropha curcas]

Gene co-expression network

sample Hb_012787_020 Hb_012787_020 Hb_005588_050 Hb_005588_050 Hb_012787_020--Hb_005588_050 Hb_071079_040 Hb_071079_040 Hb_012787_020--Hb_071079_040 Hb_000645_080 Hb_000645_080 Hb_012787_020--Hb_000645_080 Hb_028514_010 Hb_028514_010 Hb_012787_020--Hb_028514_010 Hb_001541_170 Hb_001541_170 Hb_012787_020--Hb_001541_170 Hb_115572_010 Hb_115572_010 Hb_012787_020--Hb_115572_010 Hb_004158_040 Hb_004158_040 Hb_005588_050--Hb_004158_040 Hb_005588_050--Hb_001541_170 Hb_001722_110 Hb_001722_110 Hb_005588_050--Hb_001722_110 Hb_001579_160 Hb_001579_160 Hb_005588_050--Hb_001579_160 Hb_000580_210 Hb_000580_210 Hb_005588_050--Hb_000580_210 Hb_000497_030 Hb_000497_030 Hb_071079_040--Hb_000497_030 Hb_000699_220 Hb_000699_220 Hb_071079_040--Hb_000699_220 Hb_000339_060 Hb_000339_060 Hb_071079_040--Hb_000339_060 Hb_031330_010 Hb_031330_010 Hb_071079_040--Hb_031330_010 Hb_000645_230 Hb_000645_230 Hb_071079_040--Hb_000645_230 Hb_006717_060 Hb_006717_060 Hb_071079_040--Hb_006717_060 Hb_000362_030 Hb_000362_030 Hb_000645_080--Hb_000362_030 Hb_000521_060 Hb_000521_060 Hb_000645_080--Hb_000521_060 Hb_000645_080--Hb_028514_010 Hb_017914_020 Hb_017914_020 Hb_000645_080--Hb_017914_020 Hb_000991_060 Hb_000991_060 Hb_000645_080--Hb_000991_060 Hb_002997_150 Hb_002997_150 Hb_028514_010--Hb_002997_150 Hb_006153_140 Hb_006153_140 Hb_028514_010--Hb_006153_140 Hb_009079_020 Hb_009079_020 Hb_028514_010--Hb_009079_020 Hb_002388_070 Hb_002388_070 Hb_028514_010--Hb_002388_070 Hb_004020_030 Hb_004020_030 Hb_028514_010--Hb_004020_030 Hb_135757_030 Hb_135757_030 Hb_028514_010--Hb_135757_030 Hb_001541_170--Hb_001579_160 Hb_000098_230 Hb_000098_230 Hb_001541_170--Hb_000098_230 Hb_009421_060 Hb_009421_060 Hb_001541_170--Hb_009421_060 Hb_007919_010 Hb_007919_010 Hb_001541_170--Hb_007919_010 Hb_001541_170--Hb_004158_040 Hb_011381_050 Hb_011381_050 Hb_115572_010--Hb_011381_050 Hb_009117_020 Hb_009117_020 Hb_115572_010--Hb_009117_020 Hb_000083_200 Hb_000083_200 Hb_115572_010--Hb_000083_200 Hb_001349_040 Hb_001349_040 Hb_115572_010--Hb_001349_040 Hb_002186_110 Hb_002186_110 Hb_115572_010--Hb_002186_110 Hb_001401_120 Hb_001401_120 Hb_115572_010--Hb_001401_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0364914 5.53962 5.06713 55.738 0.527277 0.548682
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.133643 0.157626 0.0951078 0.0637846 13.827

CAGE analysis