Hb_000645_080

Information

Type -
Description -
Location Contig645: 84035-85363
Sequence    

Annotation

kegg
ID rcu:RCOM_1000470
description hypothetical protein
nr
ID XP_012084089.1
description PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID A0A067K7X9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19004 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52256: 84170-84695 , PASA_asmbl_52257: 84785-85023
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000645_080 0.0 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
2 Hb_012787_020 0.100770903 - - PREDICTED: thioredoxin H7-like [Jatropha curcas]
3 Hb_000362_030 0.1062134532 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
4 Hb_000521_060 0.1080408524 - - PREDICTED: protein YLS3-like [Jatropha curcas]
5 Hb_028514_010 0.110766653 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
6 Hb_017914_020 0.1113913497 - - -
7 Hb_000991_060 0.1141842383 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
8 Hb_071079_040 0.1169786795 - - PREDICTED: bidirectional sugar transporter SWEET3 [Jatropha curcas]
9 Hb_118934_010 0.1176888546 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
10 Hb_000847_110 0.1180170117 - - conserved hypothetical protein [Ricinus communis]
11 Hb_013399_060 0.1185975931 - - PREDICTED: uncharacterized protein LOC105133408 [Populus euphratica]
12 Hb_012395_250 0.123042517 - - hypothetical protein RCOM_1217340 [Ricinus communis]
13 Hb_001216_060 0.1235933919 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003598_050 0.1250835699 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
15 Hb_009421_060 0.1258011877 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
16 Hb_001369_480 0.1258386816 transcription factor TF Family: NAC hypothetical protein POPTR_0012s14660g [Populus trichocarpa]
17 Hb_001722_110 0.1265478393 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
18 Hb_001712_010 0.1270091214 - - PREDICTED: phosphate transporter PHO1 homolog 1 [Jatropha curcas]
19 Hb_000482_080 0.1285197483 - - PREDICTED: uncharacterized protein LOC105638144 [Jatropha curcas]
20 Hb_004586_440 0.1304749243 - - Blue copper protein precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000645_080 Hb_000645_080 Hb_012787_020 Hb_012787_020 Hb_000645_080--Hb_012787_020 Hb_000362_030 Hb_000362_030 Hb_000645_080--Hb_000362_030 Hb_000521_060 Hb_000521_060 Hb_000645_080--Hb_000521_060 Hb_028514_010 Hb_028514_010 Hb_000645_080--Hb_028514_010 Hb_017914_020 Hb_017914_020 Hb_000645_080--Hb_017914_020 Hb_000991_060 Hb_000991_060 Hb_000645_080--Hb_000991_060 Hb_005588_050 Hb_005588_050 Hb_012787_020--Hb_005588_050 Hb_071079_040 Hb_071079_040 Hb_012787_020--Hb_071079_040 Hb_012787_020--Hb_028514_010 Hb_001541_170 Hb_001541_170 Hb_012787_020--Hb_001541_170 Hb_115572_010 Hb_115572_010 Hb_012787_020--Hb_115572_010 Hb_004586_440 Hb_004586_440 Hb_000362_030--Hb_004586_440 Hb_031330_010 Hb_031330_010 Hb_000362_030--Hb_031330_010 Hb_001369_480 Hb_001369_480 Hb_000362_030--Hb_001369_480 Hb_000608_090 Hb_000608_090 Hb_000362_030--Hb_000608_090 Hb_000645_230 Hb_000645_230 Hb_000362_030--Hb_000645_230 Hb_000482_080 Hb_000482_080 Hb_000362_030--Hb_000482_080 Hb_006816_060 Hb_006816_060 Hb_000521_060--Hb_006816_060 Hb_118934_010 Hb_118934_010 Hb_000521_060--Hb_118934_010 Hb_001712_010 Hb_001712_010 Hb_000521_060--Hb_001712_010 Hb_022250_140 Hb_022250_140 Hb_000521_060--Hb_022250_140 Hb_001433_230 Hb_001433_230 Hb_000521_060--Hb_001433_230 Hb_003598_050 Hb_003598_050 Hb_000521_060--Hb_003598_050 Hb_002997_150 Hb_002997_150 Hb_028514_010--Hb_002997_150 Hb_006153_140 Hb_006153_140 Hb_028514_010--Hb_006153_140 Hb_009079_020 Hb_009079_020 Hb_028514_010--Hb_009079_020 Hb_002388_070 Hb_002388_070 Hb_028514_010--Hb_002388_070 Hb_004020_030 Hb_004020_030 Hb_028514_010--Hb_004020_030 Hb_135757_030 Hb_135757_030 Hb_028514_010--Hb_135757_030 Hb_017914_020--Hb_031330_010 Hb_017914_020--Hb_000521_060 Hb_017914_020--Hb_000362_030 Hb_017914_020--Hb_071079_040 Hb_017914_020--Hb_000645_230 Hb_006252_070 Hb_006252_070 Hb_000991_060--Hb_006252_070 Hb_027411_030 Hb_027411_030 Hb_000991_060--Hb_027411_030 Hb_000291_240 Hb_000291_240 Hb_000991_060--Hb_000291_240 Hb_001296_010 Hb_001296_010 Hb_000991_060--Hb_001296_010 Hb_013399_060 Hb_013399_060 Hb_000991_060--Hb_013399_060 Hb_004757_010 Hb_004757_010 Hb_000991_060--Hb_004757_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0157586 0.193707 0.242089 3.39236 0.0453169 0.0438239
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0282783 0 0.0226159 0.588366

CAGE analysis