Hb_115572_010

Information

Type -
Description -
Location Contig115572: 19191-27245
Sequence    

Annotation

kegg
ID pop:POPTR_0005s07020g
description POPTRDRAFT_1077276; hypothetical protein
nr
ID XP_012087534.1
description PREDICTED: beta-galactosidase 6 [Jatropha curcas]
swissprot
ID Q9FFN4
description Beta-galactosidase 6 OS=Arabidopsis thaliana GN=BGAL6 PE=2 SV=1
trembl
ID U5GGX0
description Beta-galactosidase OS=Populus trichocarpa GN=POPTR_0005s07020g PE=4 SV=1
Gene Ontology
ID GO:0004553
description beta-galactosidase 6 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04686: 19144-22453 , PASA_asmbl_04687: 27075-79604
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_115572_010 0.0 - - PREDICTED: beta-galactosidase 6 [Jatropha curcas]
2 Hb_011381_050 0.0451653948 - - PREDICTED: protein GLUTAMINE DUMPER 5-like [Jatropha curcas]
3 Hb_009117_020 0.0622259327 - - RALF-LIKE 32 family protein [Populus trichocarpa]
4 Hb_000083_200 0.0855859503 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001349_040 0.0864903933 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Populus euphratica]
6 Hb_002186_110 0.0921926561 - - hypothetical protein CICLE_v10024045mg, partial [Citrus clementina]
7 Hb_001401_120 0.0944405006 - - hypothetical protein JCGZ_04273 [Jatropha curcas]
8 Hb_003032_110 0.1013499172 - - -
9 Hb_004785_220 0.1025375895 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.2 [Populus euphratica]
10 Hb_148262_010 0.1051692189 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002997_150 0.1065151458 - - hypothetical protein RCOM_1406750 [Ricinus communis]
12 Hb_001104_060 0.1075741509 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
13 Hb_100732_020 0.1080240222 - - hypothetical protein POPTR_0001s15930g [Populus trichocarpa]
14 Hb_004020_030 0.1083201143 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
15 Hb_000599_160 0.1086509053 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 21/22 [Jatropha curcas]
16 Hb_012787_020 0.1099849794 - - PREDICTED: thioredoxin H7-like [Jatropha curcas]
17 Hb_135052_010 0.1102407427 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
18 Hb_036520_030 0.1115819602 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
19 Hb_071079_040 0.1115827238 - - PREDICTED: bidirectional sugar transporter SWEET3 [Jatropha curcas]
20 Hb_000336_120 0.1147445164 - - PREDICTED: mavicyanin [Populus euphratica]

Gene co-expression network

sample Hb_115572_010 Hb_115572_010 Hb_011381_050 Hb_011381_050 Hb_115572_010--Hb_011381_050 Hb_009117_020 Hb_009117_020 Hb_115572_010--Hb_009117_020 Hb_000083_200 Hb_000083_200 Hb_115572_010--Hb_000083_200 Hb_001349_040 Hb_001349_040 Hb_115572_010--Hb_001349_040 Hb_002186_110 Hb_002186_110 Hb_115572_010--Hb_002186_110 Hb_001401_120 Hb_001401_120 Hb_115572_010--Hb_001401_120 Hb_011381_050--Hb_002186_110 Hb_011381_050--Hb_009117_020 Hb_011381_050--Hb_001401_120 Hb_036520_030 Hb_036520_030 Hb_011381_050--Hb_036520_030 Hb_000197_260 Hb_000197_260 Hb_011381_050--Hb_000197_260 Hb_009117_020--Hb_001401_120 Hb_148262_010 Hb_148262_010 Hb_009117_020--Hb_148262_010 Hb_005614_020 Hb_005614_020 Hb_009117_020--Hb_005614_020 Hb_026124_020 Hb_026124_020 Hb_009117_020--Hb_026124_020 Hb_000083_200--Hb_001349_040 Hb_112950_010 Hb_112950_010 Hb_000083_200--Hb_112950_010 Hb_009421_060 Hb_009421_060 Hb_000083_200--Hb_009421_060 Hb_000497_030 Hb_000497_030 Hb_000083_200--Hb_000497_030 Hb_006717_060 Hb_006717_060 Hb_000083_200--Hb_006717_060 Hb_000699_220 Hb_000699_220 Hb_000083_200--Hb_000699_220 Hb_001349_040--Hb_000699_220 Hb_001349_040--Hb_112950_010 Hb_001349_040--Hb_000497_030 Hb_001349_040--Hb_006717_060 Hb_000310_050 Hb_000310_050 Hb_001349_040--Hb_000310_050 Hb_002186_110--Hb_000197_260 Hb_152914_010 Hb_152914_010 Hb_002186_110--Hb_152914_010 Hb_000172_450 Hb_000172_450 Hb_002186_110--Hb_000172_450 Hb_180980_010 Hb_180980_010 Hb_002186_110--Hb_180980_010 Hb_001401_120--Hb_148262_010 Hb_001401_120--Hb_026124_020 Hb_007579_030 Hb_007579_030 Hb_001401_120--Hb_007579_030 Hb_029238_040 Hb_029238_040 Hb_001401_120--Hb_029238_040 Hb_001366_300 Hb_001366_300 Hb_001401_120--Hb_001366_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.936991 1.0964 7.46807 0.0138512 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0105966 2.48964

CAGE analysis