Hb_006252_070

Information

Type -
Description -
Location Contig6252: 103477-103848
Sequence    

Annotation

kegg
ID rcu:RCOM_1028690
description hypothetical protein
nr
ID KDP45647.1
description hypothetical protein JCGZ_17254 [Jatropha curcas]
swissprot
ID Q9LQ32
description Glucuronoxylan 4-O-methyltransferase 3 OS=Arabidopsis thaliana GN=GXM3 PE=1 SV=1
trembl
ID A0A067LB64
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17254 PE=4 SV=1
Gene Ontology
ID GO:0008168
description glucuronoxylan 4-o-methyltransferase 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006252_070 0.0 - - hypothetical protein JCGZ_17254 [Jatropha curcas]
2 Hb_000991_060 0.070716868 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
3 Hb_000188_040 0.0943581408 - - PREDICTED: uncharacterized protein LOC105629522 [Jatropha curcas]
4 Hb_000020_140 0.1051963967 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
5 Hb_001454_350 0.1056132948 - - PREDICTED: uncharacterized protein LOC105643449 [Jatropha curcas]
6 Hb_002014_130 0.1091346644 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000291_240 0.1098514711 - - hypothetical protein POPTR_0005s16430g [Populus trichocarpa]
8 Hb_000344_030 0.1106865468 - - phenylalanine ammonia-lyase 1 [Manihot esculenta]
9 Hb_001296_010 0.1113244092 - - conserved hypothetical protein [Ricinus communis]
10 Hb_027411_030 0.1159047552 - - metal ion binding protein, putative [Ricinus communis]
11 Hb_009421_060 0.1161553786 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
12 Hb_010863_020 0.1176845572 - - PREDICTED: BTB/POZ domain-containing protein At1g03010-like isoform X1 [Jatropha curcas]
13 Hb_013399_060 0.1203749358 - - PREDICTED: uncharacterized protein LOC105133408 [Populus euphratica]
14 Hb_000449_070 0.1227341729 - - unnamed protein product [Vitis vinifera]
15 Hb_005291_020 0.1233657961 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006386_010 0.1260856763 - - PREDICTED: polygalacturonase QRT3 [Jatropha curcas]
17 Hb_000482_080 0.1273262222 - - PREDICTED: uncharacterized protein LOC105638144 [Jatropha curcas]
18 Hb_001579_160 0.1277054144 - - PREDICTED: kininogen-1-like [Jatropha curcas]
19 Hb_025557_080 0.1294230712 transcription factor TF Family: zf-HD -
20 Hb_008731_010 0.1307981313 - - hypothetical protein POPTR_0605s00010g [Populus trichocarpa]

Gene co-expression network

sample Hb_006252_070 Hb_006252_070 Hb_000991_060 Hb_000991_060 Hb_006252_070--Hb_000991_060 Hb_000188_040 Hb_000188_040 Hb_006252_070--Hb_000188_040 Hb_000020_140 Hb_000020_140 Hb_006252_070--Hb_000020_140 Hb_001454_350 Hb_001454_350 Hb_006252_070--Hb_001454_350 Hb_002014_130 Hb_002014_130 Hb_006252_070--Hb_002014_130 Hb_000291_240 Hb_000291_240 Hb_006252_070--Hb_000291_240 Hb_027411_030 Hb_027411_030 Hb_000991_060--Hb_027411_030 Hb_000991_060--Hb_000291_240 Hb_001296_010 Hb_001296_010 Hb_000991_060--Hb_001296_010 Hb_013399_060 Hb_013399_060 Hb_000991_060--Hb_013399_060 Hb_004757_010 Hb_004757_010 Hb_000991_060--Hb_004757_010 Hb_002031_020 Hb_002031_020 Hb_000188_040--Hb_002031_020 Hb_180518_010 Hb_180518_010 Hb_000188_040--Hb_180518_010 Hb_000188_040--Hb_001454_350 Hb_005291_020 Hb_005291_020 Hb_000188_040--Hb_005291_020 Hb_000462_120 Hb_000462_120 Hb_000188_040--Hb_000462_120 Hb_000449_070 Hb_000449_070 Hb_000020_140--Hb_000449_070 Hb_049453_010 Hb_049453_010 Hb_000020_140--Hb_049453_010 Hb_006386_010 Hb_006386_010 Hb_000020_140--Hb_006386_010 Hb_002171_050 Hb_002171_050 Hb_000020_140--Hb_002171_050 Hb_004625_020 Hb_004625_020 Hb_000020_140--Hb_004625_020 Hb_004158_040 Hb_004158_040 Hb_001454_350--Hb_004158_040 Hb_001579_160 Hb_001579_160 Hb_001454_350--Hb_001579_160 Hb_001722_110 Hb_001722_110 Hb_001454_350--Hb_001722_110 Hb_010217_020 Hb_010217_020 Hb_001454_350--Hb_010217_020 Hb_009421_060 Hb_009421_060 Hb_001454_350--Hb_009421_060 Hb_002014_130--Hb_005291_020 Hb_003580_020 Hb_003580_020 Hb_002014_130--Hb_003580_020 Hb_006717_060 Hb_006717_060 Hb_002014_130--Hb_006717_060 Hb_000497_030 Hb_000497_030 Hb_002014_130--Hb_000497_030 Hb_000408_060 Hb_000408_060 Hb_002014_130--Hb_000408_060 Hb_002014_130--Hb_009421_060 Hb_025557_080 Hb_025557_080 Hb_000291_240--Hb_025557_080 Hb_000291_240--Hb_001454_350 Hb_000243_240 Hb_000243_240 Hb_000291_240--Hb_000243_240 Hb_145975_010 Hb_145975_010 Hb_000291_240--Hb_145975_010 Hb_001141_430 Hb_001141_430 Hb_000291_240--Hb_001141_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.69115 26.0216 27.4629 522.226 1.40177 4.32491
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.14236 27.8607 105.289

CAGE analysis