Hb_000408_060

Information

Type -
Description -
Location Contig408: 108880-109426
Sequence    

Annotation

kegg
ID pop:POPTR_0018s11360g
description POPTRDRAFT_825947; hypothetical protein
nr
ID XP_002324529.1
description hypothetical protein POPTR_0018s11360g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9IMB8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s11360g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40377: 108980-109510
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000408_060 0.0 - - hypothetical protein POPTR_0018s11360g [Populus trichocarpa]
2 Hb_003090_220 0.0775647989 - - PREDICTED: copper transporter 4 [Jatropha curcas]
3 Hb_002014_130 0.0830473102 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001818_010 0.0858695059 - - Disease resistance response protein, putative [Ricinus communis]
5 Hb_006153_140 0.0947305393 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
6 Hb_003680_240 0.0955522405 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
7 Hb_000866_130 0.0957728594 - - hypothetical protein JCGZ_14397 [Jatropha curcas]
8 Hb_002260_140 0.0984411101 - - conserved hypothetical protein [Ricinus communis]
9 Hb_135757_030 0.0995040129 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
10 Hb_000207_060 0.0996090267 - - PREDICTED: uncharacterized protein LOC105634368 [Jatropha curcas]
11 Hb_006717_060 0.0999571558 - - PREDICTED: peroxidase 42 [Jatropha curcas]
12 Hb_000093_010 0.105491138 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
13 Hb_001789_230 0.1059297311 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003849_170 0.1091242972 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
15 Hb_132381_010 0.1094587985 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
16 Hb_028514_010 0.1117103441 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
17 Hb_000083_200 0.1119494006 - - conserved hypothetical protein [Ricinus communis]
18 Hb_010142_060 0.1137567091 - - Blue copper protein precursor, putative [Ricinus communis]
19 Hb_112950_010 0.1149184748 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
20 Hb_004531_160 0.1157255314 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000408_060 Hb_000408_060 Hb_003090_220 Hb_003090_220 Hb_000408_060--Hb_003090_220 Hb_002014_130 Hb_002014_130 Hb_000408_060--Hb_002014_130 Hb_001818_010 Hb_001818_010 Hb_000408_060--Hb_001818_010 Hb_006153_140 Hb_006153_140 Hb_000408_060--Hb_006153_140 Hb_003680_240 Hb_003680_240 Hb_000408_060--Hb_003680_240 Hb_000866_130 Hb_000866_130 Hb_000408_060--Hb_000866_130 Hb_000207_060 Hb_000207_060 Hb_003090_220--Hb_000207_060 Hb_001789_230 Hb_001789_230 Hb_003090_220--Hb_001789_230 Hb_003090_220--Hb_001818_010 Hb_005648_020 Hb_005648_020 Hb_003090_220--Hb_005648_020 Hb_170077_020 Hb_170077_020 Hb_003090_220--Hb_170077_020 Hb_005291_020 Hb_005291_020 Hb_002014_130--Hb_005291_020 Hb_003580_020 Hb_003580_020 Hb_002014_130--Hb_003580_020 Hb_006717_060 Hb_006717_060 Hb_002014_130--Hb_006717_060 Hb_000497_030 Hb_000497_030 Hb_002014_130--Hb_000497_030 Hb_009421_060 Hb_009421_060 Hb_002014_130--Hb_009421_060 Hb_002260_140 Hb_002260_140 Hb_001818_010--Hb_002260_140 Hb_051212_020 Hb_051212_020 Hb_001818_010--Hb_051212_020 Hb_009079_020 Hb_009079_020 Hb_001818_010--Hb_009079_020 Hb_001818_010--Hb_000866_130 Hb_112950_010 Hb_112950_010 Hb_001818_010--Hb_112950_010 Hb_135757_030 Hb_135757_030 Hb_001818_010--Hb_135757_030 Hb_006153_140--Hb_009079_020 Hb_002686_220 Hb_002686_220 Hb_006153_140--Hb_002686_220 Hb_006153_140--Hb_001818_010 Hb_006153_140--Hb_112950_010 Hb_006153_140--Hb_000866_130 Hb_015175_070 Hb_015175_070 Hb_006153_140--Hb_015175_070 Hb_003680_240--Hb_002686_220 Hb_003598_050 Hb_003598_050 Hb_003680_240--Hb_003598_050 Hb_003680_240--Hb_006153_140 Hb_000331_630 Hb_000331_630 Hb_003680_240--Hb_000331_630 Hb_140627_040 Hb_140627_040 Hb_003680_240--Hb_140627_040 Hb_017061_010 Hb_017061_010 Hb_003680_240--Hb_017061_010 Hb_003466_010 Hb_003466_010 Hb_000866_130--Hb_003466_010 Hb_004032_290 Hb_004032_290 Hb_000866_130--Hb_004032_290 Hb_000083_200 Hb_000083_200 Hb_000866_130--Hb_000083_200 Hb_004020_030 Hb_004020_030 Hb_000866_130--Hb_004020_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.392482 1.67424 9.43396 0.126184 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.342538 2.00103

CAGE analysis