Hb_009079_020

Information

Type -
Description -
Location Contig9079: 18952-21851
Sequence    

Annotation

kegg
ID rcu:RCOM_1596180
description Auxin-induced protein 5NG4, putative
nr
ID XP_012071956.1
description PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
swissprot
ID Q94AP3
description Protein WALLS ARE THIN 1 OS=Arabidopsis thaliana GN=WAT1 PE=1 SV=1
trembl
ID E6NU65
description JHL18I08.9 protein OS=Jatropha curcas GN=JHL18I08.9 PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein walls are thin 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62089: 18929-21920 , PASA_asmbl_62090: 21024-40750
cDNA
(Sanger)
(ID:Location)		 006_O09.ab1: 19034-19409 , 011_P04.ab1: 19034-19409 , 021_F14.ab1: 20835-21920 , 021_F23.ab1: 19036-20753 , 028_K12.ab1: 20843-21920 , 029_D19.ab1: 21001-21920 , 034_L18.ab1: 20801-21920 , 034_N13.ab1: 20807-21920 , 040_J19.ab1: 20801-21920 , 040_J22.ab1: 20831-21917 , 050_K01.ab1: 20937-21917

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009079_020 0.0 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
2 Hb_006153_140 0.0602232755 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
3 Hb_002260_140 0.0608733971 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001818_010 0.0672479244 - - Disease resistance response protein, putative [Ricinus communis]
5 Hb_000724_060 0.0714135008 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
6 Hb_112950_010 0.0723263651 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
7 Hb_002686_220 0.0756461928 - - PREDICTED: expansin-A15-like [Jatropha curcas]
8 Hb_001500_020 0.0765276069 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_003175_120 0.0789501266 - - PREDICTED: uncharacterized protein LOC105141472 isoform X1 [Populus euphratica]
10 Hb_003598_050 0.0808905924 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
11 Hb_135757_030 0.0820856568 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
12 Hb_051212_020 0.0851933142 - - PREDICTED: 24-methylenesterol C-methyltransferase 2-like [Jatropha curcas]
13 Hb_006351_050 0.08866483 - - PREDICTED: uncharacterized protein LOC105133646 [Populus euphratica]
14 Hb_000866_130 0.08960693 - - hypothetical protein JCGZ_14397 [Jatropha curcas]
15 Hb_015175_070 0.0913026716 - - cysteine protease, putative [Ricinus communis]
16 Hb_028514_010 0.0938156371 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
17 Hb_000083_200 0.0946525641 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007122_020 0.0961050679 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
19 Hb_001349_040 0.0974905033 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Populus euphratica]
20 Hb_000172_450 0.1007799367 - - Uncharacterized protein TCM_001203 [Theobroma cacao]

Gene co-expression network

sample Hb_009079_020 Hb_009079_020 Hb_006153_140 Hb_006153_140 Hb_009079_020--Hb_006153_140 Hb_002260_140 Hb_002260_140 Hb_009079_020--Hb_002260_140 Hb_001818_010 Hb_001818_010 Hb_009079_020--Hb_001818_010 Hb_000724_060 Hb_000724_060 Hb_009079_020--Hb_000724_060 Hb_112950_010 Hb_112950_010 Hb_009079_020--Hb_112950_010 Hb_002686_220 Hb_002686_220 Hb_009079_020--Hb_002686_220 Hb_006153_140--Hb_002686_220 Hb_006153_140--Hb_001818_010 Hb_006153_140--Hb_112950_010 Hb_000866_130 Hb_000866_130 Hb_006153_140--Hb_000866_130 Hb_015175_070 Hb_015175_070 Hb_006153_140--Hb_015175_070 Hb_002260_140--Hb_001818_010 Hb_135757_030 Hb_135757_030 Hb_002260_140--Hb_135757_030 Hb_001500_020 Hb_001500_020 Hb_002260_140--Hb_001500_020 Hb_000172_450 Hb_000172_450 Hb_002260_140--Hb_000172_450 Hb_002260_140--Hb_112950_010 Hb_051212_020 Hb_051212_020 Hb_001818_010--Hb_051212_020 Hb_001818_010--Hb_000866_130 Hb_001818_010--Hb_112950_010 Hb_001818_010--Hb_135757_030 Hb_000724_060--Hb_015175_070 Hb_004607_060 Hb_004607_060 Hb_000724_060--Hb_004607_060 Hb_002092_060 Hb_002092_060 Hb_000724_060--Hb_002092_060 Hb_005127_050 Hb_005127_050 Hb_000724_060--Hb_005127_050 Hb_007122_020 Hb_007122_020 Hb_000724_060--Hb_007122_020 Hb_003598_050 Hb_003598_050 Hb_112950_010--Hb_003598_050 Hb_000083_200 Hb_000083_200 Hb_112950_010--Hb_000083_200 Hb_112950_010--Hb_002686_220 Hb_112950_010--Hb_001500_020 Hb_001349_040 Hb_001349_040 Hb_112950_010--Hb_001349_040 Hb_180088_010 Hb_180088_010 Hb_112950_010--Hb_180088_010 Hb_002686_220--Hb_003598_050 Hb_006573_120 Hb_006573_120 Hb_002686_220--Hb_006573_120 Hb_002686_220--Hb_015175_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.895415 35.9607 88.5978 408.186 0.959634 0.967694
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0305033 0 0 2.86334 75.4718

CAGE analysis