Hb_006153_140

Information

Type -
Description -
Location Contig6153: 126993-131193
Sequence    

Annotation

kegg
ID tcc:TCM_016011
description Adenine phosphoribosyl transferase 4
nr
ID XP_012087148.1
description PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
swissprot
ID Q9SU38
description Adenine phosphoribosyltransferase 4 OS=Arabidopsis thaliana GN=APT4 PE=1 SV=1
trembl
ID A0A067K1H8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20795 PE=3 SV=1
Gene Ontology
ID GO:0005737
description adenine phosphoribosyltransferase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51197: 126911-127147 , PASA_asmbl_51198: 127154-131377
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006153_140 0.0 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
2 Hb_009079_020 0.0602232755 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
3 Hb_002686_220 0.068239064 - - PREDICTED: expansin-A15-like [Jatropha curcas]
4 Hb_001818_010 0.077296408 - - Disease resistance response protein, putative [Ricinus communis]
5 Hb_112950_010 0.0782335122 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
6 Hb_000866_130 0.0790134782 - - hypothetical protein JCGZ_14397 [Jatropha curcas]
7 Hb_015175_070 0.0790879171 - - cysteine protease, putative [Ricinus communis]
8 Hb_028514_010 0.0795724782 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
9 Hb_003598_050 0.080283465 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
10 Hb_000083_200 0.0808489726 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006717_060 0.0827792237 - - PREDICTED: peroxidase 42 [Jatropha curcas]
12 Hb_135757_030 0.0829233363 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
13 Hb_001349_040 0.0830642808 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Populus euphratica]
14 Hb_003680_240 0.0870220518 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
15 Hb_002260_140 0.0929097769 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000408_060 0.0947305393 - - hypothetical protein POPTR_0018s11360g [Populus trichocarpa]
17 Hb_003175_120 0.095437409 - - PREDICTED: uncharacterized protein LOC105141472 isoform X1 [Populus euphratica]
18 Hb_001500_020 0.0971613863 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_000336_120 0.0973483684 - - PREDICTED: mavicyanin [Populus euphratica]
20 Hb_051212_020 0.0987517332 - - PREDICTED: 24-methylenesterol C-methyltransferase 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_006153_140 Hb_006153_140 Hb_009079_020 Hb_009079_020 Hb_006153_140--Hb_009079_020 Hb_002686_220 Hb_002686_220 Hb_006153_140--Hb_002686_220 Hb_001818_010 Hb_001818_010 Hb_006153_140--Hb_001818_010 Hb_112950_010 Hb_112950_010 Hb_006153_140--Hb_112950_010 Hb_000866_130 Hb_000866_130 Hb_006153_140--Hb_000866_130 Hb_015175_070 Hb_015175_070 Hb_006153_140--Hb_015175_070 Hb_002260_140 Hb_002260_140 Hb_009079_020--Hb_002260_140 Hb_009079_020--Hb_001818_010 Hb_000724_060 Hb_000724_060 Hb_009079_020--Hb_000724_060 Hb_009079_020--Hb_112950_010 Hb_009079_020--Hb_002686_220 Hb_002686_220--Hb_112950_010 Hb_003598_050 Hb_003598_050 Hb_002686_220--Hb_003598_050 Hb_006573_120 Hb_006573_120 Hb_002686_220--Hb_006573_120 Hb_002686_220--Hb_015175_070 Hb_001818_010--Hb_002260_140 Hb_051212_020 Hb_051212_020 Hb_001818_010--Hb_051212_020 Hb_001818_010--Hb_000866_130 Hb_001818_010--Hb_112950_010 Hb_135757_030 Hb_135757_030 Hb_001818_010--Hb_135757_030 Hb_112950_010--Hb_003598_050 Hb_000083_200 Hb_000083_200 Hb_112950_010--Hb_000083_200 Hb_001500_020 Hb_001500_020 Hb_112950_010--Hb_001500_020 Hb_001349_040 Hb_001349_040 Hb_112950_010--Hb_001349_040 Hb_180088_010 Hb_180088_010 Hb_112950_010--Hb_180088_010 Hb_003466_010 Hb_003466_010 Hb_000866_130--Hb_003466_010 Hb_004032_290 Hb_004032_290 Hb_000866_130--Hb_004032_290 Hb_000866_130--Hb_000083_200 Hb_004020_030 Hb_004020_030 Hb_000866_130--Hb_004020_030 Hb_002092_060 Hb_002092_060 Hb_015175_070--Hb_002092_060 Hb_000336_120 Hb_000336_120 Hb_015175_070--Hb_000336_120 Hb_000310_050 Hb_000310_050 Hb_015175_070--Hb_000310_050 Hb_002309_020 Hb_002309_020 Hb_015175_070--Hb_002309_020 Hb_005295_030 Hb_005295_030 Hb_015175_070--Hb_005295_030 Hb_015175_070--Hb_001349_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.152583 1.66353 5.70714 30.2225 0.035987 0.0948811
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.397122 6.41729

CAGE analysis