Hb_015175_070

Information

Type -
Description -
Location Contig15175: 66225-72559
Sequence    

Annotation

kegg
ID rcu:RCOM_1601980
description cysteine protease, putative (EC:1.3.1.74)
nr
ID XP_002510720.1
description cysteine protease, putative [Ricinus communis]
swissprot
ID Q9LM66
description Xylem cysteine proteinase 2 OS=Arabidopsis thaliana GN=XCP2 PE=2 SV=2
trembl
ID B9R8S7
description Cysteine protease, putative OS=Ricinus communis GN=RCOM_1601980 PE=3 SV=1
Gene Ontology
ID GO:0008234
description xylem cysteine proteinase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12903: 66270-67800
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015175_070 0.0 - - cysteine protease, putative [Ricinus communis]
2 Hb_002092_060 0.0424157698 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000336_120 0.058649963 - - PREDICTED: mavicyanin [Populus euphratica]
4 Hb_000310_050 0.0626223315 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
5 Hb_002309_020 0.0695845914 - - hypothetical protein JCGZ_26057 [Jatropha curcas]
6 Hb_005295_030 0.0756922995 - - PREDICTED: uncharacterized protein LOC105645488 [Jatropha curcas]
7 Hb_001349_040 0.076361698 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Populus euphratica]
8 Hb_002686_220 0.0776195485 - - PREDICTED: expansin-A15-like [Jatropha curcas]
9 Hb_006153_140 0.0790879171 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
10 Hb_000317_380 0.0812938624 - - Peroxidase 47 precursor, putative [Ricinus communis]
11 Hb_000724_060 0.0816415463 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
12 Hb_009079_020 0.0913026716 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
13 Hb_006717_060 0.0920223082 - - PREDICTED: peroxidase 42 [Jatropha curcas]
14 Hb_000005_290 0.0924192624 - - Serine carboxypeptidase, putative [Ricinus communis]
15 Hb_132381_010 0.0924950527 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
16 Hb_006573_120 0.092520661 - - PREDICTED: DUF21 domain-containing protein At5g52790 [Jatropha curcas]
17 Hb_000531_030 0.0951683951 - - conserved hypothetical protein [Ricinus communis]
18 Hb_012114_090 0.0954996394 - - tubulin beta chain, putative [Ricinus communis]
19 Hb_000866_130 0.0955900424 - - hypothetical protein JCGZ_14397 [Jatropha curcas]
20 Hb_006977_010 0.0962930534 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_015175_070 Hb_015175_070 Hb_002092_060 Hb_002092_060 Hb_015175_070--Hb_002092_060 Hb_000336_120 Hb_000336_120 Hb_015175_070--Hb_000336_120 Hb_000310_050 Hb_000310_050 Hb_015175_070--Hb_000310_050 Hb_002309_020 Hb_002309_020 Hb_015175_070--Hb_002309_020 Hb_005295_030 Hb_005295_030 Hb_015175_070--Hb_005295_030 Hb_001349_040 Hb_001349_040 Hb_015175_070--Hb_001349_040 Hb_002092_060--Hb_002309_020 Hb_002092_060--Hb_005295_030 Hb_000005_290 Hb_000005_290 Hb_002092_060--Hb_000005_290 Hb_002092_060--Hb_000310_050 Hb_000317_380 Hb_000317_380 Hb_002092_060--Hb_000317_380 Hb_012114_090 Hb_012114_090 Hb_000336_120--Hb_012114_090 Hb_000336_120--Hb_000310_050 Hb_000699_220 Hb_000699_220 Hb_000336_120--Hb_000699_220 Hb_001369_480 Hb_001369_480 Hb_000336_120--Hb_001369_480 Hb_006717_060 Hb_006717_060 Hb_000336_120--Hb_006717_060 Hb_006573_120 Hb_006573_120 Hb_000310_050--Hb_006573_120 Hb_000310_050--Hb_012114_090 Hb_000310_050--Hb_001349_040 Hb_000310_050--Hb_000699_220 Hb_002309_020--Hb_000005_290 Hb_001975_110 Hb_001975_110 Hb_002309_020--Hb_001975_110 Hb_002309_020--Hb_005295_030 Hb_001496_150 Hb_001496_150 Hb_002309_020--Hb_001496_150 Hb_006977_010 Hb_006977_010 Hb_005295_030--Hb_006977_010 Hb_004162_200 Hb_004162_200 Hb_005295_030--Hb_004162_200 Hb_004899_230 Hb_004899_230 Hb_005295_030--Hb_004899_230 Hb_000083_200 Hb_000083_200 Hb_001349_040--Hb_000083_200 Hb_001349_040--Hb_000699_220 Hb_112950_010 Hb_112950_010 Hb_001349_040--Hb_112950_010 Hb_000497_030 Hb_000497_030 Hb_001349_040--Hb_000497_030 Hb_001349_040--Hb_006717_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.105598 9.08264 45.9021 208.022 0.207301 0.127105
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.192216 53.3236

CAGE analysis