Hb_001369_480

Information

Type transcription factor
Description TF Family: NAC
Location Contig1369: 404245-405675
Sequence    

Annotation

kegg
ID pop:POPTR_0012s14660g
description POPTRDRAFT_773505; hypothetical protein
nr
ID XP_002318288.1
description hypothetical protein POPTR_0012s14660g [Populus trichocarpa]
swissprot
ID Q9FWX2
description NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2
trembl
ID B9I4M8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s14660g PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10192: 404554-404868
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_480 0.0 transcription factor TF Family: NAC hypothetical protein POPTR_0012s14660g [Populus trichocarpa]
2 Hb_012114_090 0.0680015493 - - tubulin beta chain, putative [Ricinus communis]
3 Hb_000336_120 0.0706788269 - - PREDICTED: mavicyanin [Populus euphratica]
4 Hb_001269_180 0.0723223498 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
5 Hb_055276_010 0.0779204011 - - hypothetical protein POPTR_0003s02950g [Populus trichocarpa]
6 Hb_006717_060 0.0790861921 - - PREDICTED: peroxidase 42 [Jatropha curcas]
7 Hb_000699_220 0.0797865031 - - PREDICTED: phospholipid-metabolizing enzyme A-C1-like [Jatropha curcas]
8 Hb_004586_440 0.0811503751 - - Blue copper protein precursor, putative [Ricinus communis]
9 Hb_071079_040 0.0812586283 - - PREDICTED: bidirectional sugar transporter SWEET3 [Jatropha curcas]
10 Hb_009079_010 0.0849342037 - - JHL18I08.8 [Jatropha curcas]
11 Hb_000608_090 0.0912018805 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000362_030 0.0913223012 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
13 Hb_000497_030 0.0937952221 - - -
14 Hb_003580_020 0.0963981531 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000310_050 0.0969377525 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
16 Hb_001349_040 0.0991965699 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Populus euphratica]
17 Hb_031330_010 0.0995344137 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
18 Hb_005616_020 0.1034332695 - - kinase, putative [Ricinus communis]
19 Hb_006153_140 0.1036689172 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
20 Hb_001456_030 0.1040845949 - - PREDICTED: bifunctional pinoresinol-lariciresinol reductase 2 [Vitis vinifera]

Gene co-expression network

sample Hb_001369_480 Hb_001369_480 Hb_012114_090 Hb_012114_090 Hb_001369_480--Hb_012114_090 Hb_000336_120 Hb_000336_120 Hb_001369_480--Hb_000336_120 Hb_001269_180 Hb_001269_180 Hb_001369_480--Hb_001269_180 Hb_055276_010 Hb_055276_010 Hb_001369_480--Hb_055276_010 Hb_006717_060 Hb_006717_060 Hb_001369_480--Hb_006717_060 Hb_000699_220 Hb_000699_220 Hb_001369_480--Hb_000699_220 Hb_012114_090--Hb_000336_120 Hb_012114_090--Hb_000699_220 Hb_012114_090--Hb_006717_060 Hb_000310_050 Hb_000310_050 Hb_012114_090--Hb_000310_050 Hb_001456_030 Hb_001456_030 Hb_012114_090--Hb_001456_030 Hb_015175_070 Hb_015175_070 Hb_000336_120--Hb_015175_070 Hb_000336_120--Hb_000310_050 Hb_000336_120--Hb_000699_220 Hb_000336_120--Hb_006717_060 Hb_001269_180--Hb_000336_120 Hb_001269_180--Hb_006717_060 Hb_000531_030 Hb_000531_030 Hb_001269_180--Hb_000531_030 Hb_005116_150 Hb_005116_150 Hb_001269_180--Hb_005116_150 Hb_001269_180--Hb_012114_090 Hb_009079_010 Hb_009079_010 Hb_055276_010--Hb_009079_010 Hb_005357_170 Hb_005357_170 Hb_055276_010--Hb_005357_170 Hb_000997_220 Hb_000997_220 Hb_055276_010--Hb_000997_220 Hb_000318_500 Hb_000318_500 Hb_055276_010--Hb_000318_500 Hb_001433_230 Hb_001433_230 Hb_055276_010--Hb_001433_230 Hb_006717_060--Hb_000699_220 Hb_000497_030 Hb_000497_030 Hb_006717_060--Hb_000497_030 Hb_003580_020 Hb_003580_020 Hb_006717_060--Hb_003580_020 Hb_001349_040 Hb_001349_040 Hb_006717_060--Hb_001349_040 Hb_000699_220--Hb_000497_030 Hb_000699_220--Hb_001349_040 Hb_005616_020 Hb_005616_020 Hb_000699_220--Hb_005616_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0725129 0.22599 0.876106 7.86708 0.0194211 0.037735
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0139718 2.00965

CAGE analysis