Hb_003580_020

Information

Type -
Description -
Location Contig3580: 17967-18749
Sequence    

Annotation

kegg
ID rcu:RCOM_0549630
description hypothetical protein
nr
ID XP_002532284.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SJ81
description Fasciclin-like arabinogalactan protein 7 OS=Arabidopsis thaliana GN=FLA7 PE=1 SV=1
trembl
ID B9T215
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0549630 PE=4 SV=1
Gene Ontology
ID GO:0046658
description fasciclin-like arabinogalactan protein 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36916: 16962-18170 , PASA_asmbl_36917: 18216-18618
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003580_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005291_020 0.0503273331 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000462_120 0.0526415951 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
4 Hb_006717_060 0.0584711988 - - PREDICTED: peroxidase 42 [Jatropha curcas]
5 Hb_000497_030 0.058898934 - - -
6 Hb_000699_220 0.0777059841 - - PREDICTED: phospholipid-metabolizing enzyme A-C1-like [Jatropha curcas]
7 Hb_002014_130 0.0779120972 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005616_020 0.0781292571 - - kinase, putative [Ricinus communis]
9 Hb_027577_010 0.086700777 - - PREDICTED: uncharacterized protein LOC104779928 [Camelina sativa]
10 Hb_012114_090 0.0870756291 - - tubulin beta chain, putative [Ricinus communis]
11 Hb_031330_010 0.0894844442 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
12 Hb_000729_040 0.0895712087 - - xyloglucan endotransglucosylase/hydrolase protein 10 precursor [Populus trichocarpa]
13 Hb_180518_010 0.0909843591 - - PREDICTED: receptor-like protein 2 [Jatropha curcas]
14 Hb_001456_030 0.0920594909 - - PREDICTED: bifunctional pinoresinol-lariciresinol reductase 2 [Vitis vinifera]
15 Hb_000997_220 0.0925121874 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA14-like [Jatropha curcas]
16 Hb_009079_010 0.0939345217 - - JHL18I08.8 [Jatropha curcas]
17 Hb_000483_340 0.0949407781 - - conserved hypothetical protein [Ricinus communis]
18 Hb_071079_040 0.0949837023 - - PREDICTED: bidirectional sugar transporter SWEET3 [Jatropha curcas]
19 Hb_001369_480 0.0963981531 transcription factor TF Family: NAC hypothetical protein POPTR_0012s14660g [Populus trichocarpa]
20 Hb_001856_250 0.0974572086 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_003580_020 Hb_003580_020 Hb_005291_020 Hb_005291_020 Hb_003580_020--Hb_005291_020 Hb_000462_120 Hb_000462_120 Hb_003580_020--Hb_000462_120 Hb_006717_060 Hb_006717_060 Hb_003580_020--Hb_006717_060 Hb_000497_030 Hb_000497_030 Hb_003580_020--Hb_000497_030 Hb_000699_220 Hb_000699_220 Hb_003580_020--Hb_000699_220 Hb_002014_130 Hb_002014_130 Hb_003580_020--Hb_002014_130 Hb_005291_020--Hb_000462_120 Hb_005291_020--Hb_002014_130 Hb_180518_010 Hb_180518_010 Hb_005291_020--Hb_180518_010 Hb_027577_010 Hb_027577_010 Hb_005291_020--Hb_027577_010 Hb_005291_020--Hb_000497_030 Hb_005616_020 Hb_005616_020 Hb_000462_120--Hb_005616_020 Hb_000729_040 Hb_000729_040 Hb_000462_120--Hb_000729_040 Hb_001456_030 Hb_001456_030 Hb_000462_120--Hb_001456_030 Hb_000462_120--Hb_027577_010 Hb_006717_060--Hb_000699_220 Hb_006717_060--Hb_000497_030 Hb_012114_090 Hb_012114_090 Hb_006717_060--Hb_012114_090 Hb_001349_040 Hb_001349_040 Hb_006717_060--Hb_001349_040 Hb_000336_120 Hb_000336_120 Hb_006717_060--Hb_000336_120 Hb_000497_030--Hb_000699_220 Hb_071079_040 Hb_071079_040 Hb_000497_030--Hb_071079_040 Hb_000497_030--Hb_001349_040 Hb_000083_200 Hb_000083_200 Hb_000497_030--Hb_000083_200 Hb_000699_220--Hb_012114_090 Hb_000699_220--Hb_001349_040 Hb_000699_220--Hb_000336_120 Hb_000699_220--Hb_005616_020 Hb_002014_130--Hb_006717_060 Hb_002014_130--Hb_000497_030 Hb_000408_060 Hb_000408_060 Hb_002014_130--Hb_000408_060 Hb_009421_060 Hb_009421_060 Hb_002014_130--Hb_009421_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.226678 5.25936 31.2827 340.446 0.0302978 0.137536
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.098572 5.52942 78.8547

CAGE analysis