Hb_071079_040

Information

Type -
Description -
Location Contig71079: 37951-39789
Sequence    

Annotation

kegg
ID rcu:RCOM_1580410
description hypothetical protein
nr
ID XP_012090112.1
description PREDICTED: bidirectional sugar transporter SWEET3 [Jatropha curcas]
swissprot
ID Q6NQN5
description Bidirectional sugar transporter SWEET3 OS=Arabidopsis thaliana GN=SWEET3 PE=2 SV=1
trembl
ID A0A067JRM2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26000 PE=4 SV=1
Gene Ontology
ID GO:0005887
description bidirectional sugar transporter sweet3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55280: 37991-39914
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_071079_040 0.0 - - PREDICTED: bidirectional sugar transporter SWEET3 [Jatropha curcas]
2 Hb_000497_030 0.0624361176 - - -
3 Hb_000699_220 0.0695836948 - - PREDICTED: phospholipid-metabolizing enzyme A-C1-like [Jatropha curcas]
4 Hb_000339_060 0.0696067509 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
5 Hb_031330_010 0.0699612987 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
6 Hb_000645_230 0.0728136925 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
7 Hb_006717_060 0.0776939161 - - PREDICTED: peroxidase 42 [Jatropha curcas]
8 Hb_001349_040 0.0785399655 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Populus euphratica]
9 Hb_001369_480 0.0812586283 transcription factor TF Family: NAC hypothetical protein POPTR_0012s14660g [Populus trichocarpa]
10 Hb_000083_200 0.081669655 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003638_020 0.0832527282 - - PREDICTED: uncharacterized protein LOC105645807 [Jatropha curcas]
12 Hb_001722_110 0.0853859824 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
13 Hb_004586_440 0.0879157827 - - Blue copper protein precursor, putative [Ricinus communis]
14 Hb_005616_020 0.0882883469 - - kinase, putative [Ricinus communis]
15 Hb_009421_060 0.0915043168 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
16 Hb_012114_090 0.0921295704 - - tubulin beta chain, putative [Ricinus communis]
17 Hb_000608_090 0.0924838037 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000449_070 0.0928563819 - - unnamed protein product [Vitis vinifera]
19 Hb_012787_020 0.0930542056 - - PREDICTED: thioredoxin H7-like [Jatropha curcas]
20 Hb_000336_120 0.093825111 - - PREDICTED: mavicyanin [Populus euphratica]

Gene co-expression network

sample Hb_071079_040 Hb_071079_040 Hb_000497_030 Hb_000497_030 Hb_071079_040--Hb_000497_030 Hb_000699_220 Hb_000699_220 Hb_071079_040--Hb_000699_220 Hb_000339_060 Hb_000339_060 Hb_071079_040--Hb_000339_060 Hb_031330_010 Hb_031330_010 Hb_071079_040--Hb_031330_010 Hb_000645_230 Hb_000645_230 Hb_071079_040--Hb_000645_230 Hb_006717_060 Hb_006717_060 Hb_071079_040--Hb_006717_060 Hb_000497_030--Hb_000699_220 Hb_000497_030--Hb_006717_060 Hb_003580_020 Hb_003580_020 Hb_000497_030--Hb_003580_020 Hb_001349_040 Hb_001349_040 Hb_000497_030--Hb_001349_040 Hb_000083_200 Hb_000083_200 Hb_000497_030--Hb_000083_200 Hb_000699_220--Hb_006717_060 Hb_012114_090 Hb_012114_090 Hb_000699_220--Hb_012114_090 Hb_000699_220--Hb_001349_040 Hb_000336_120 Hb_000336_120 Hb_000699_220--Hb_000336_120 Hb_005616_020 Hb_005616_020 Hb_000699_220--Hb_005616_020 Hb_003638_020 Hb_003638_020 Hb_000339_060--Hb_003638_020 Hb_002085_060 Hb_002085_060 Hb_000339_060--Hb_002085_060 Hb_070771_010 Hb_070771_010 Hb_000339_060--Hb_070771_010 Hb_002499_030 Hb_002499_030 Hb_000339_060--Hb_002499_030 Hb_000684_190 Hb_000684_190 Hb_000339_060--Hb_000684_190 Hb_031330_010--Hb_000645_230 Hb_000483_340 Hb_000483_340 Hb_031330_010--Hb_000483_340 Hb_004884_040 Hb_004884_040 Hb_031330_010--Hb_004884_040 Hb_031330_010--Hb_000684_190 Hb_001856_250 Hb_001856_250 Hb_031330_010--Hb_001856_250 Hb_000645_230--Hb_000684_190 Hb_002785_020 Hb_002785_020 Hb_000645_230--Hb_002785_020 Hb_000645_230--Hb_004884_040 Hb_002734_020 Hb_002734_020 Hb_000645_230--Hb_002734_020 Hb_000645_230--Hb_000483_340 Hb_006717_060--Hb_003580_020 Hb_006717_060--Hb_012114_090 Hb_006717_060--Hb_001349_040 Hb_006717_060--Hb_000336_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0458281 6.44254 9.93436 121.951 0.222347 0.28935
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.105014 0 0 0.614887 31.783

CAGE analysis