Hb_005357_170

Information

Type -
Description -
Location Contig5357: 134421-136614
Sequence    

Annotation

kegg
ID rcu:RCOM_0905530
description Pectinesterase precursor, putative (EC:3.1.1.11)
nr
ID XP_002518523.1
description Pectinesterase precursor, putative [Ricinus communis]
swissprot
ID P83947
description Pectinesterase/pectinesterase inhibitor OS=Ficus pumila var. awkeotsang PE=1 SV=1
trembl
ID B9RXQ4
description Pectinesterase OS=Ricinus communis GN=RCOM_0905530 PE=3 SV=1
Gene Ontology
ID GO:0005618
description pectin methylesterase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47560: 134420-136719
cDNA
(Sanger)
(ID:Location)		 015_A02.ab1: 134423-135146 , 025_A17.ab1: 134423-135210 , 025_I10.ab1: 134423-135213

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005357_170 0.0 - - Pectinesterase precursor, putative [Ricinus communis]
2 Hb_003685_070 0.0718560452 - - RecName: Full=(S)-hydroxynitrile lyase; AltName: Full=(S)-acetone-cyanohydrin lyase; AltName: Full=Oxynitrilase [Hevea brasiliensis]
3 Hb_003765_010 0.0768338891 - - berberine bridge enzyme [Hevea brasiliensis]
4 Hb_001887_010 0.0784171698 - - mta/sah nucleosidase, putative [Ricinus communis]
5 Hb_055276_010 0.0786052788 - - hypothetical protein POPTR_0003s02950g [Populus trichocarpa]
6 Hb_001433_230 0.0809158944 - - PREDICTED: kinesin-4-like [Jatropha curcas]
7 Hb_011224_030 0.1002647435 - - PREDICTED: oligopeptide transporter 1-like isoform X1 [Jatropha curcas]
8 Hb_150179_010 0.101109016 - - hypothetical protein JCGZ_21079 [Jatropha curcas]
9 Hb_014834_100 0.1011452642 - - PREDICTED: probable aquaporin TIP-type [Gossypium raimondii]
10 Hb_000997_220 0.1015811009 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA14-like [Jatropha curcas]
11 Hb_000313_080 0.104829101 rubber biosynthesis Gene Name: CPT3 cis-prenyltransferase 3 [Hevea brasiliensis]
12 Hb_003754_010 0.1048444721 - - hypothetical protein POPTR_0019s09950g [Populus trichocarpa]
13 Hb_001557_030 0.1058965029 - - hypothetical protein CICLE_v10005306mg [Citrus clementina]
14 Hb_002073_210 0.1080447659 - - conserved hypothetical protein [Ricinus communis]
15 Hb_022250_140 0.1097082658 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
16 Hb_004957_010 0.1109421044 - - PREDICTED: probable aquaporin NIP-type [Prunus mume]
17 Hb_006249_010 0.1125531826 - - hypothetical protein JCGZ_13152 [Jatropha curcas]
18 Hb_001634_050 0.1139605359 - - PREDICTED: fasciclin-like arabinogalactan protein 12 [Jatropha curcas]
19 Hb_009079_010 0.1153257814 - - JHL18I08.8 [Jatropha curcas]
20 Hb_029584_030 0.1158042784 - - hypothetical protein JCGZ_07310 [Jatropha curcas]

Gene co-expression network

sample Hb_005357_170 Hb_005357_170 Hb_003685_070 Hb_003685_070 Hb_005357_170--Hb_003685_070 Hb_003765_010 Hb_003765_010 Hb_005357_170--Hb_003765_010 Hb_001887_010 Hb_001887_010 Hb_005357_170--Hb_001887_010 Hb_055276_010 Hb_055276_010 Hb_005357_170--Hb_055276_010 Hb_001433_230 Hb_001433_230 Hb_005357_170--Hb_001433_230 Hb_011224_030 Hb_011224_030 Hb_005357_170--Hb_011224_030 Hb_003685_070--Hb_001887_010 Hb_150179_010 Hb_150179_010 Hb_003685_070--Hb_150179_010 Hb_003685_070--Hb_011224_030 Hb_007007_140 Hb_007007_140 Hb_003685_070--Hb_007007_140 Hb_024066_020 Hb_024066_020 Hb_003685_070--Hb_024066_020 Hb_003765_010--Hb_001887_010 Hb_153544_020 Hb_153544_020 Hb_003765_010--Hb_153544_020 Hb_000868_020 Hb_000868_020 Hb_003765_010--Hb_000868_020 Hb_003754_010 Hb_003754_010 Hb_003765_010--Hb_003754_010 Hb_010327_060 Hb_010327_060 Hb_003765_010--Hb_010327_060 Hb_001887_010--Hb_150179_010 Hb_001557_030 Hb_001557_030 Hb_001887_010--Hb_001557_030 Hb_002073_210 Hb_002073_210 Hb_001887_010--Hb_002073_210 Hb_009079_010 Hb_009079_010 Hb_055276_010--Hb_009079_010 Hb_001369_480 Hb_001369_480 Hb_055276_010--Hb_001369_480 Hb_000997_220 Hb_000997_220 Hb_055276_010--Hb_000997_220 Hb_000318_500 Hb_000318_500 Hb_055276_010--Hb_000318_500 Hb_055276_010--Hb_001433_230 Hb_022250_140 Hb_022250_140 Hb_001433_230--Hb_022250_140 Hb_014834_100 Hb_014834_100 Hb_001433_230--Hb_014834_100 Hb_006816_060 Hb_006816_060 Hb_001433_230--Hb_006816_060 Hb_001634_050 Hb_001634_050 Hb_001433_230--Hb_001634_050 Hb_005396_020 Hb_005396_020 Hb_001433_230--Hb_005396_020 Hb_011224_030--Hb_150179_010 Hb_000664_010 Hb_000664_010 Hb_011224_030--Hb_000664_010 Hb_029584_030 Hb_029584_030 Hb_011224_030--Hb_029584_030 Hb_002471_310 Hb_002471_310 Hb_011224_030--Hb_002471_310 Hb_002308_040 Hb_002308_040 Hb_011224_030--Hb_002308_040 Hb_011224_030--Hb_007007_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.48722 4.55135 95.7445 1079.96 2.70684 4.13783
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.93562 0.355938 0 0.120369 141.636

CAGE analysis