Hb_003685_070

Information

Type -
Description -
Location Contig3685: 101251-103530
Sequence    

Annotation

kegg
ID eus:EUTSA_v10014451mg
description hypothetical protein
nr
ID P52704.1
description RecName: Full=(S)-hydroxynitrile lyase; AltName: Full=(S)-acetone-cyanohydrin lyase; AltName: Full=Oxynitrilase [Hevea brasiliensis]
swissprot
ID P52704
description (S)-hydroxynitrile lyase OS=Hevea brasiliensis GN=HNL PE=1 SV=1
trembl
ID O49897
description Alpha-hydroxynitrile lyase OS=Manihot esculenta GN=HNL4 PE=4 SV=1
Gene Ontology
ID GO:0046593
description #NAME?

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37899: 101110-103529
cDNA
(Sanger)
(ID:Location)		 002_K08.ab1: 101420-103529 , 002_P13.ab1: 101439-103529 , 006_B12.ab1: 101483-103529 , 007_A10.ab1: 101477-103529 , 007_B13.ab1: 101417-103529 , 007_L15.ab1: 101431-103529 , 007_N14.ab1: 101476-103529 , 008_O09.ab1: 102832-103529 , 012_K17.ab1: 101411-103529 , 016_O03.ab1: 101415-103529 , 017_L10.ab1: 101432-103529 , 020_E19.ab1: 101409-103529 , 020_O21.ab1: 101485-103529 , 020_P20.ab1: 101500-103529 , 021_C15.ab1: 101419-103529 , 021_O08.ab1: 101439-103529 , 024_P17.ab1: 101510-103529 , 028_H01.ab1: 101493-103529 , 028_H18.ab1: 101587-103529 , 028_H20.ab1: 101604-103529 , 029_D17.ab1: 102882-103528 , 030_A20.ab1: 101484-103529 , 033_K03.ab1: 101441-103529 , 033_P18.ab1: 101482-103529 , 034_J06.ab1: 101338-103529 , 035_P20.ab1: 101487-103529 , 040_O12.ab1: 101442-103522 , 041_K05.ab1: 101518-103529 , 042_M01.ab1: 101485-103529 , 048_A11.ab1: 101432-103529 , 051_F22.ab1: 101480-103529 , 052_G05.ab1: 101495-103530 , 052_G11.ab1: 101484-103529

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003685_070 0.0 - - RecName: Full=(S)-hydroxynitrile lyase; AltName: Full=(S)-acetone-cyanohydrin lyase; AltName: Full=Oxynitrilase [Hevea brasiliensis]
2 Hb_001887_010 0.0558048583 - - mta/sah nucleosidase, putative [Ricinus communis]
3 Hb_150179_010 0.0628067895 - - hypothetical protein JCGZ_21079 [Jatropha curcas]
4 Hb_011224_030 0.0657066938 - - PREDICTED: oligopeptide transporter 1-like isoform X1 [Jatropha curcas]
5 Hb_007007_140 0.0704945281 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL6 [Jatropha curcas]
6 Hb_005357_170 0.0718560452 - - Pectinesterase precursor, putative [Ricinus communis]
7 Hb_024066_020 0.0725493095 - - P66 protein [Hevea brasiliensis]
8 Hb_001557_030 0.0757088312 - - hypothetical protein CICLE_v10005306mg [Citrus clementina]
9 Hb_002471_310 0.0776287509 - - PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
10 Hb_000664_010 0.0796932314 - - PREDICTED: histidine-containing phosphotransfer protein 4-like [Jatropha curcas]
11 Hb_029584_030 0.0801903178 - - hypothetical protein JCGZ_07310 [Jatropha curcas]
12 Hb_004732_080 0.0805991349 - - PREDICTED: germin-like protein subfamily 3 member 2 [Populus euphratica]
13 Hb_002308_040 0.0807719098 - - methyladenine glycosylase family protein [Populus trichocarpa]
14 Hb_004396_020 0.0849338714 - - SAUR-like auxin-responsive protein family [Theobroma cacao]
15 Hb_000731_180 0.0916944691 - - hypothetical protein POPTR_0004s01820g [Populus trichocarpa]
16 Hb_002073_210 0.09240087 - - conserved hypothetical protein [Ricinus communis]
17 Hb_014834_100 0.0933863385 - - PREDICTED: probable aquaporin TIP-type [Gossypium raimondii]
18 Hb_000313_080 0.0940746639 rubber biosynthesis Gene Name: CPT3 cis-prenyltransferase 3 [Hevea brasiliensis]
19 Hb_005665_100 0.0960489329 - - PREDICTED: RING-H2 finger protein ATL63-like [Populus euphratica]
20 Hb_004693_040 0.0977162585 - - -

Gene co-expression network

sample Hb_003685_070 Hb_003685_070 Hb_001887_010 Hb_001887_010 Hb_003685_070--Hb_001887_010 Hb_150179_010 Hb_150179_010 Hb_003685_070--Hb_150179_010 Hb_011224_030 Hb_011224_030 Hb_003685_070--Hb_011224_030 Hb_007007_140 Hb_007007_140 Hb_003685_070--Hb_007007_140 Hb_005357_170 Hb_005357_170 Hb_003685_070--Hb_005357_170 Hb_024066_020 Hb_024066_020 Hb_003685_070--Hb_024066_020 Hb_001887_010--Hb_150179_010 Hb_001557_030 Hb_001557_030 Hb_001887_010--Hb_001557_030 Hb_003765_010 Hb_003765_010 Hb_001887_010--Hb_003765_010 Hb_001887_010--Hb_005357_170 Hb_002073_210 Hb_002073_210 Hb_001887_010--Hb_002073_210 Hb_150179_010--Hb_011224_030 Hb_150179_010--Hb_001557_030 Hb_029584_030 Hb_029584_030 Hb_150179_010--Hb_029584_030 Hb_000664_010 Hb_000664_010 Hb_150179_010--Hb_000664_010 Hb_150179_010--Hb_007007_140 Hb_011224_030--Hb_000664_010 Hb_011224_030--Hb_029584_030 Hb_002471_310 Hb_002471_310 Hb_011224_030--Hb_002471_310 Hb_002308_040 Hb_002308_040 Hb_011224_030--Hb_002308_040 Hb_011224_030--Hb_007007_140 Hb_007007_140--Hb_024066_020 Hb_004396_020 Hb_004396_020 Hb_007007_140--Hb_004396_020 Hb_004732_080 Hb_004732_080 Hb_007007_140--Hb_004732_080 Hb_007007_140--Hb_002308_040 Hb_007007_140--Hb_002471_310 Hb_005357_170--Hb_003765_010 Hb_055276_010 Hb_055276_010 Hb_005357_170--Hb_055276_010 Hb_001433_230 Hb_001433_230 Hb_005357_170--Hb_001433_230 Hb_005357_170--Hb_011224_030 Hb_024066_020--Hb_004396_020 Hb_024066_020--Hb_004732_080 Hb_024066_020--Hb_002308_040 Hb_004693_040 Hb_004693_040 Hb_024066_020--Hb_004693_040 Hb_024066_020--Hb_002471_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.9517 3.73176 778.191 6410.22 9.3279 4.12224
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.27498 0.417805 0.383533 0.0168177 702.253

CAGE analysis